PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000530G0160
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 1379aa    MW: 150077 Da    PI: 4.2329
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000530G0160genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.14.1e-10923946427
                      ---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                      ++C f++r+GtC+yG +C+++H++
  PH01000530G0160 923 RNCTFYMRNGTCRYGKKCHYNHPE 946
                      79********************96 PP
2zf-CCCH28.23.2e-0910971123127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHgp 27  
                       +++++C+f++r+G Ck+ + Ck++H++
  PH01000530G0160 1097 PGRPECPFYMRFGDCKFASACKYHHSK 1123
                       689**********************95 PP
3zf-CCCH33.57.3e-1111481174127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHgp 27  
                       +++++C+f++++ +Ck+G+ CkF+H++
  PH01000530G0160 1148 PGEPECPFYMKSRFCKFGAECKFHHPK 1174
                       5799*********************96 PP
4zf-CCCH22.12.7e-0712181244127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHgp 27  
                       ++++ Cr+++++G Cky + C F+H++
  PH01000530G0160 1218 PGQPDCRYYMQSGKCKYLSACIFHHPK 1244
                       5789*********************96 PP
5zf-CCCH322.1e-1012851311127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHgp 27  
                       +++++C+f+++tGtC++G+ C F H++
  PH01000530G0160 1285 PGMPECPFYMKTGTCQFGSLCEFRHPK 1311
                       5799*********************96 PP
6zf-CCCH19.12.3e-0613511377127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHgp 27  
                       +++++C++++r G Ck+  +Ck++H++
  PH01000530G0160 1351 PGEPECSYYMRHGSCKFQMNCKYHHPR 1377
                       5799*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035642863886IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5919946IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.286919947IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-6922947IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-7923946IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4925946IPR000571Zinc finger, CCCH-type
SMARTSM003560.003810961123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.27710961124IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-610971123IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-411471174IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.49311471175IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-811491174IPR000571Zinc finger, CCCH-type
SMARTSM003560.001912171244IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.51612171245IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-512191244IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-612841311IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.75612841312IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-812861311IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-512881313IPR000571Zinc finger, CCCH-type
SMARTSM003560.01713501377IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.39413501378IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1379 aa     Download sequence    Send to blast
MAEAEAADET DQTPASPPGL GFSSPALHAA AQVATIAAHG DELEDGAGEL ESGDALQLEL  60
DADEEEGAPR GNGGDADQVG ADTLDGGDGA VLCFGSPPPS LSPAIVLGGE ESSAISSHAS  120
SPQAGPGLGR RLLGAIGLAS PSKPPGVIHR AKLGLGSGLV LRLKGDQEEG AAHHRDTKEE  180
EMVHKCSDAN WSTTDEASAL EGQVEEESTV GEINAERGAT VDDTDAKGQQ LVDQDTGDQC  240
KQADQVIDVG EELVLEGGLG DKWGPTNNAL TVEDWEKPVK QDECAANGND YDIALEGQEK  300
EAEQCTSDEL GATMDDSAVE HQVMVELEGA IDKQGANKDG ITVEDQEKAV KQCTSGELGA  360
TMNDNVVEDQ ETVEPEGAVH KQGDITLEDK EKAMEQCAGD KSTATNDENA VEEKEKVVEQ  420
EDTLDKQVTI KDGNAVEYQE EVVEQGVIGE QSAIGDDIAR DDQEKVVQQC TSDDLRSTMD  480
DNAVGDQEVV VQDVIDERGG TTNGIVVEDQ EKVVEQCATD ELGATENGDA VEDQEVAEQG  540
VITEMGETTY DIAVEDKEKA MEQCTTDELG ATKNDDAVED QEVAEQGVIT EMGATMDDNV  600
VEDHEVVEQS VIDERGGTTD AIAVEDQEKA VEQCAVHKSR AAKDEKAVEE KEKVVEQGVI  660
DKQGAMPVDD IAAEDQEKAV EQYFSDQLVT NKDENAVEEH KKVAEQGVID GSGGTKDDIY  720
VEEQENVKEQ GIIDKWDTAN DGTALEDQKK AAELCIGDEQ RAIEDVVAVR NQENMLQQSI  780
SDERGATKGK FTVENRKGVV ERARHEWGAT EDDLAVDTAA SGGVSGISSS DVVSVSINGS  840
DGETVKKGKV KLCVRYPQRP GKLNGPFYMS TGCYSYGLSC HFNHPPLQAN SDVSSVPSEQ  900
GNHGVAEILE LNRVGLPIRE GARNCTFYMR NGTCRYGKKC HYNHPEQVID AQLYPPTGWE  960
DNVLPSSPHL KKSSDHATLD DTSYLKKSSD DATLDDTSYS KRSSDHATLD GTSYSKKSSD  1020
HATLDNTSSS SEVLPPNILR MLLPPQKVPP STEGKVMKVK KDPDWSSASD DSDGCCSADS  1080
SDGPLCKQEH VDYPERPGRP ECPFYMRFGD CKFASACKYH HSKDRFPCRY HSKDPLLGEE  1140
LIEYPERPGE PECPFYMKSR FCKFGAECKF HHPKDLTPSR RNPTTTKKSV AAANEHHPAI  1200
RITLKDHICP QQQHPERPGQ PDCRYYMQSG KCKYLSACIF HHPKDRLPSG WHPSDPAHSD  1260
QYDTWQPTNR IEDLCQQAQI GPEIPGMPEC PFYMKTGTCQ FGSLCEFRHP KDRCSTTEEA  1320
IDQGTDLAYH NFTRSDNVPQ LQEQTMYPER PGEPECSYYM RHGSCKFQMN CKYHHPRD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000530G0160
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230944.20.0uncharacterized protein LOC100842536
RefseqXP_014753624.10.0uncharacterized protein LOC100842536
RefseqXP_014753625.10.0uncharacterized protein LOC100842536
TrEMBLA0A2K2D8J60.0A0A2K2D8J6_BRADI; Uncharacterized protein
STRINGMLOC_56050.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147291820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.14e-47zinc finger nuclease 3