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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
PH01000538G0420 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
| Family |
GRAS |
| Protein Properties |
Length: 367aa MW: 39754.7 Da PI: 5.3323 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PH01000538G0420 | genome | ICBR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 246.9 | 7.8e-76 | 2 | 365 | 25 | 374 |
GRAS 25 arlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfshltaNqaIleavegeervHiiDf 117
+ l+elasp+gd q+la+yf+++L arl+ s++++ ++l++ +++++ s +++ + l f+e+sP+ f+h++aN aIl+
PH01000538G0420 2 WMLNELASPYGDVEQKLASYFLQGLFARLTASGQRTLRTLAAASDRNT-SFDSTRRTALrFQELSPWSSFGHVAANGAILRG------------ 82
789*************************************99888744.44444444446********************96............ PP
GRAS 118 disqGlQWpaLlqaLasRp.egppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvak.rledleleeLrvkp...gEa 201
++ + Wp+Ll+aLa+R+ +++p+l iT+v+s++++ ++ ++e+g+r++kfA+ +gvpf+f+++++ +l++l+l++L++++ a
PH01000538G0420 83 GVVGTAEWPTLLEALATRSaDDTPHLSITTVVSAAPSaptaaVQRVMREIGQRMEKFARLMGVPFRFRAVHHAgDLAELDLDALDLREggaTTA 176
678899*************889***********988889999999************************97767**************888889 PP
GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nse.............sFlerflealeyysalfdsleaklpresee 281
laVn+v +l ++ ++ + rd++ +++l P+vv+vve+ead+ + Fl+ f e l+++sa +dsle+++p++s+e
PH01000538G0420 177 LAVNCVNSLRGVV--PGGARR-RDAFAASLRRLDPRVVTVVEEEADLvA-SdsdasdeggdtetAFLKVFGEGLRFFSAYMDSLEESFPKTSNE 266
************9..555555.99********************99953.447999*******9****************************** PP
GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveee.......sgslvlgWkdrpL 367
r +Er gr+iv++v+c +e+ er+et++ W +r+++ aGF+pv++se++a+++++llr++ +g+++ + + ++l Wk++pL
PH01000538G0420 267 RLALERG-AGRAIVDLVSCPASESMERRETAAAWARRMRSsAGFSPVAFSEDVADDVRSLLRRYR-EGWSMRDAgtddsaaGAGVFLAWKEQPL 358
*******.******************************9779**********************9.88888844444455355566******** PP
GRAS 368 vsvSaWr 374
v++SaWr
PH01000538G0420 359 VWASAWR 365
******8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 367 aa
Download sequence Send
to blast |
MWMLNELASP YGDVEQKLAS YFLQGLFARL TASGQRTLRT LAAASDRNTS FDSTRRTALR 60
FQELSPWSSF GHVAANGAIL RGGVVGTAEW PTLLEALATR SADDTPHLSI TTVVSAAPSA 120
PTAAVQRVMR EIGQRMEKFA RLMGVPFRFR AVHHAGDLAE LDLDALDLRE GGATTALAVN 180
CVNSLRGVVP GGARRRDAFA ASLRRLDPRV VTVVEEEADL VASDSDASDE GGDTETAFLK 240
VFGEGLRFFS AYMDSLEESF PKTSNERLAL ERGAGRAIVD LVSCPASESM ERRETAAAWA 300
RRMRSSAGFS PVAFSEDVAD DVRSLLRRYR EGWSMRDAGT DDSAAGAGVF LAWKEQPLVW 360
ASAWRP*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK120959 | 0.0 | AK120959.1 Oryza sativa Japonica Group cDNA clone:J023039J21, full insert sequence. |
| GenBank | AP003985 | 0.0 | AP003985.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1047_C01. |
| GenBank | AP005437 | 0.0 | AP005437.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1113_E01. |
| GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
