PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000538G0560
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HRT-like
Protein Properties Length: 1000aa    MW: 108099 Da    PI: 8.4452
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000538G0560genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like45.31.5e-14683712131
         HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                      +CGv+l+dGs C + Pv+gRKRCe HKG+R+
  PH01000538G0560 683 VCGVMLQDGS-CLERPVQGRKRCELHKGRRV 712
                      7********8.*******************7 PP
2HRT-like36.21e-11907935130
         HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                      iCGv +++G  C + P+ gRKRCeeHKG +
  PH01000538G0560 907 ICGVVTDNG-YCIMVPMAGRKRCEEHKGIK 935
                      8********.6*****************77 PP
3HRT-like46.46.4e-15953981129
         HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGm 29 
                      iCG++ +dGs+Ck+qP+ gRKRC+ HK  
  PH01000538G0560 953 ICGARASDGSPCKNQPIAGRKRCALHKEL 981
                      8**************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF527434.58E-292973IPR000209Peptidase S8/S53 domain
PRINTSPR007232.1E-85372IPR015500Peptidase S8, subtilisin-related
Gene3DG3DSA:3.40.50.2001.2E-75574IPR000209Peptidase S8/S53 domain
PfamPF000821.1E-455150IPR000209Peptidase S8/S53 domain
SuperFamilySSF527434.58E-29103340IPR000209Peptidase S8/S53 domain
Gene3DG3DSA:3.40.50.2001.2E-7111150IPR000209Peptidase S8/S53 domain
PRINTSPR007232.1E-8135148IPR015500Peptidase S8, subtilisin-related
PfamPF000829.3E-14153338IPR000209Peptidase S8/S53 domain
Gene3DG3DSA:3.40.50.2005.1E-22154183IPR000209Peptidase S8/S53 domain
Gene3DG3DSA:3.40.50.2005.1E-22242379IPR000209Peptidase S8/S53 domain
PRINTSPR007232.1E-8295311IPR015500Peptidase S8, subtilisin-related
SMARTSM004650.0084447553IPR000305GIY-YIG nuclease superfamily
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:2000033Biological Processregulation of seed dormancy process
GO:0004252Molecular Functionserine-type endopeptidase activity
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1000 aa     Download sequence    Send to blast
MSPPVVAAAL VGATGVAAVV LERVRCLATT RSPRFLGLLS SPPSVLLANS DFDVDLVITI  60
IDIGISPTHR SFHDQGFSPV PPKSTPKWCG VCASGPGFPP NSCNRKLVGV RFFSVGYEAT  120
SGRMNETTEV KSSLDTDGHG THTASIAAGR YVFLVSASAG NGGPSGLTVT NVAPWMATAS  180
AGSMDRAFPA NVRLGNGQVL DGVSVYGGSA LESGKMYELV YTGTSSGAAS SFIDGYSASM  240
CLDGSLDQAA VHGKNVILKP DLIAPGLNIL TVWPSSVGLP GIPCDGRRTE FNILSETSMA  300
CPYVSDLAAW LKASHPTWSP TAIKSTLMTT AYIKDNNNST STMVEESIGN VVDVLNFSAR  360
HVNPTRAMDS GLIYDRWQEE RSGFELKRED CPRTKHDPLF SPWKVLVGPS DWEDHSTGKE  420
GVQRYRILNL PENFPGLYEL GVARASDEGA RSRRHGLGGV VVVYLGQADN VRARLQQYGR  480
TGSHLDTGNS LPSAGKAEAN ALAAGPGLFR EVFSIGYSVV FRCALMGNKQ EAEKTEAQLL  540
RVFDYAWNKL QNGACRREEI LLKLEQGALG HGSSLLSRVR HFKQKMFREK AGIKISRSGS  600
VHISSGIMEN MLPRVRAFIG FRPQLVDSGD NVDEAIDIHW ENTSESNTCG SKQAHGRRSE  660
GYKVKKINVI KRRTVPTRDS NSVCGVMLQD GSCLERPVQG RKRCELHKGR RVTGNPKLSF  720
SSYTREVEIP IVESIPRLTE NASKSDQAQQ IVVILSENLP TTVKESSRQR NSFEAKEVKT  780
GEAPTEDGTY ETSVDADTCR AKMSDSSVCN DKVMLGSKRC QLHDGWKEAQ FVSSGLVDLL  840
QNDGKLHSKT SDQLCGEKTS DAESQSQGKQ PSGRMWFELL KAQKSASVLS SRGPGCQTRV  900
TDDVANICGV VTDNGYCIMV PMAGRKRCEE HKGIKVTDAS FEPFSRSSGW PSICGARASD  960
GSPCKNQPIA GRKRCALHKE LKNGSVMSHS YPEHCAFFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3vta_A3e-18293841490Cucumisin
3vta_B3e-18293841490Cucumisin
4yn3_A3e-18293841490Cucumisin
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000538G0560
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694489.10.0PREDICTED: uncharacterized protein LOC102711820
TrEMBLJ3MMH70.0J3MMH7_ORYBR; Uncharacterized protein
STRINGOB07G26090.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79483443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.19e-56effector of transcription2