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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | PH01000542G0130 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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| Family | G2-like | ||||||||
| Protein Properties | Length: 260aa MW: 28287.5 Da PI: 7.0184 | ||||||||
| Description | G2-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 106.8 | 1.2e-33 | 41 | 95 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
k+r+rWtpe He+Fv+av+qLGGsekAtPk +l+lmkv+gLt++hvkSHLQkYR+
PH01000542G0130 41 KQRMRWTPEHHECFVDAVNQLGGSEKATPKGVLKLMKVDGLTIYHVKSHLQKYRT 95
79****************************************************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 12.022 | 38 | 98 | IPR017930 | Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 3.8E-32 | 39 | 97 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 3.94E-18 | 40 | 95 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 2.7E-25 | 41 | 95 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 3.2E-9 | 43 | 94 | IPR001005 | SANT/Myb domain |
| Pfam | PF14379 | 7.2E-26 | 124 | 171 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 260 aa Download sequence Send to blast |
MSMVQPSNLT ASQPAISQSA SSHSGEICPV ASPPSNASAA KQRMRWTPEH HECFVDAVNQ 60 LGGSEKATPK GVLKLMKVDG LTIYHVKSHL QKYRTARYKP DLSEGSTEKM SSTDELSLDL 120 KTSMDLTEAL RLQMEVQKRL HEQLEIQRKL QLRIEEQGKY LQMMFEKQCK SSTEKVQDPS 180 SADTAAPSSD PSHSASKDTD AALDPHRTGD NPGTAELGPN STPVGGNQKT SETESSDSLA 240 TANDGSKLPQ EKRRRVHSS* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j4k_A | 5e-29 | 40 | 99 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4k_B | 5e-29 | 40 | 99 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_A | 5e-29 | 40 | 99 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_C | 5e-29 | 40 | 99 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_D | 5e-29 | 40 | 99 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_F | 5e-29 | 40 | 99 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_H | 5e-29 | 40 | 99 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_J | 5e-29 | 40 | 99 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase | ||||||
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 251 | 255 | KRRRV |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcription factor involved in phosphate starvation signaling. Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes. Functionally redundant with PHR2 and PHR3 in regulating Pi starvation response and Pi homeostasis. {ECO:0000250|UniProtKB:Q10LZ1}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | PH01000542G0130 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | JF831533 | 1e-156 | JF831533.1 Zea mays isolate A phosphate starvation protein (PHR1) mRNA, complete cds. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_025794590.1 | 1e-145 | protein PHOSPHATE STARVATION RESPONSE 1-like isoform X1 | ||||
| Refseq | XP_025794591.1 | 1e-145 | protein PHOSPHATE STARVATION RESPONSE 1-like isoform X1 | ||||
| Swissprot | B8ANX9 | 1e-138 | PHR1_ORYSI; Protein PHOSPHATE STARVATION RESPONSE 1 | ||||
| TrEMBL | A0A2T7CD29 | 1e-144 | A0A2T7CD29_9POAL; Uncharacterized protein | ||||
| STRING | Pavir.Ia03429.1.p | 1e-141 | (Panicum virgatum) | ||||
| STRING | Pavir.J39104.1.p | 1e-142 | (Panicum virgatum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP1971 | 37 | 89 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G29000.3 | 2e-65 | G2-like family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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