PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000549G0590
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 302aa    MW: 31612.3 Da    PI: 6.7482
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000549G0590genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.32.7e-32118175259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vk+s+fprsYYrCt  +C+vkk+v+rs+edp+vv++tYeg+H h+
  PH01000549G0590 118 EDGYRWRKYGQKAVKNSPFPRSYYRCTNIKCTVKKRVQRSSEDPSVVITTYEGQHCHH 175
                      8******************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-33102176IPR003657WRKY domain
SuperFamilySSF1182902.88E-28109175IPR003657WRKY domain
PROSITE profilePS5081129.046112177IPR003657WRKY domain
SMARTSM007742.3E-38117176IPR003657WRKY domain
PfamPF031061.1E-25118175IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MAGDGGGDWP FSADAYADSS AMFAELGWAA GLDAAGELPP LDPPEATLSE VATPAGSADG  60
GASSSSTDDG ATPEDADGKP AAASTEAASK PASGKKGQKR ARQPRFAFMT KSEIDHLEDG  120
YRWRKYGQKA VKNSPFPRSY YRCTNIKCTV KKRVQRSSED PSVVITTYEG QHCHHTVTFP  180
RGGAGALAHI HAAALAGQMA FSAHHLHNSL PEMHGTHQNH PPPALDPLVC RPAMPPSLLQ  240
PLHCNQELQA TGSYPLSSTT TMSVTSVSAQ SSLMTAMSSP ASVPVDKGLL DDMVPPAMRH  300
G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-25107174774Probable WRKY transcription factor 4
2lex_A3e-25107174774Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000549G0590
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418591e-94AY341859.1 Oryza sativa (japonica cultivar-group) WRKY19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149447.11e-117probable WRKY transcription factor 57
TrEMBLA0A3B6C5U01e-122A0A3B6C5U0_WHEAT; Uncharacterized protein
TrEMBLA0A446M9N71e-122A0A446M9N7_TRITD; Uncharacterized protein
STRINGTraes_2BL_A69F6C5DF.11e-123(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21253796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.27e-53WRKY DNA-binding protein 57