PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000557G0340
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 216aa    MW: 23370.6 Da    PI: 10.2123
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000557G0340genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.71.8e-31139197259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+ +dp+++++tYeg+H+h+
  PH01000557G0340 139 ADDYSWRKYGQKPIKGSPYPRGYYKCSTLrGCPARKHVERDPNDPSMLIVTYEGDHRHT 197
                      69************************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.7E-8116136IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.6E-33126197IPR003657WRKY domain
PROSITE profilePS5081129.987133199IPR003657WRKY domain
SuperFamilySSF1182902.35E-26136197IPR003657WRKY domain
SMARTSM007748.7E-36138198IPR003657WRKY domain
PfamPF031061.7E-26140196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MTIDLMGGYG RVDEQVAIQE AAAAGLRGME HLILQLSRTG TGERSPVGAS ASAAVAQAQH  60
QPVDCREITD MTVSKFKKVI SILNRTGHAR FRRGPVVAQS QGSAVYEPAP ARAASSRKSR  120
VKRTIRVPAV SSKVADIPAD DYSWRKYGQK PIKGSPYPRG YYKCSTLRGC PARKHVERDP  180
NDPSMLIVTY EGDHRHTPGA AGEEPTLPLP EQPKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-22126196271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts, when in complex with WRKY71, specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1. {ECO:0000250|UniProtKB:Q0JEE2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000557G0340
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells (By similarity) (PubMed:15618416). Accumulates in response to uniconazole, a gibberellic acid (GA) biosynthesis inhibitor (By similarity). Repressed by GA (PubMed:15618416). {ECO:0000250|UniProtKB:Q0JEE2, ECO:0000269|PubMed:15618416}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1009542e-89AK100954.1 Oryza sativa Japonica Group cDNA clone:J023139N16, full insert sequence.
GenBankAK1214942e-89AK121494.1 Oryza sativa Japonica Group cDNA clone:J033000L17, full insert sequence.
GenBankHQ8588322e-89HQ858832.1 Oryza sativa Japonica Group isolate UT1331 WRKY transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020266739.11e-57LOW QUALITY PROTEIN: WRKY transcription factor WRKY51-like
SwissprotQ6IEN18e-53WRK51_ORYSI; WRKY transcription factor WRKY51
TrEMBLM8AF291e-104M8AF29_TRIUA; Putative WRKY transcription factor 15
STRINGTRIUR3_28409-P11e-105(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.22e-43WRKY DNA-binding protein 11