PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000561G0310
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 339aa    MW: 37579.4 Da    PI: 7.7351
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000561G0310genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.68.1e-07266286426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      e Cr+f++  tC++ ++C+FaH+
  PH01000561G0310 266 EVCRDFLK-KTCNR-ESCRFAHP 286
                      89******.*****.*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF146081.2158170No hitNo description
PROSITE profilePS5010312.174189215IPR000571Zinc finger, CCCH-type
SMARTSM003560.14190214IPR000571Zinc finger, CCCH-type
PfamPF146082195212No hitNo description
PROSITE profilePS5010313.216262288IPR000571Zinc finger, CCCH-type
SMARTSM003560.0032263287IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-4266286IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-4266286IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MEDAKIKGDA YLQGQGGVSE VGGDQIRRTV GPAHLEVVGF AGVEDPAEEV AELAEGEDET  60
LAEERGEHGH VREPHHPRFL SLAQSHSVDE VGANRSSTCI WLCRWGEADG SGGKHEGGRA  120
SRVGSGMKSR RREARVGRAA RERAASNTGG ERESRRRCTR PDIECKYAHP HQSVCVERSL  180
LRLIGVEDPK VKMVCQDFLR GRCDRKSCRY SHVVAHPMPP MRNIPMQYPE YPEMVYMPPP  240
LPLGVPMMVP PPSPPRNFSD NKNTVEVCRD FLKKTCNRES CRFAHPDSHT EFKLALLVDI  300
LIFLMLNRAG GDSTGTYYQG NGVWSNGSWK TRHSPADV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000561G0310
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109041922