PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000573G0640
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 220aa    MW: 22851.8 Da    PI: 9.6028
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000573G0640genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.9e-202777256
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                     + +GVr ++ +gr++AeIrdp     r +r++lg+f+tae+Aa+a++aa+++l+g+
  PH01000573G0640 27 RLRGVRKRP-WGRYAAEIRDP---A-RkTRVWLGTFDTAEQAARAYDAAARRLRGP 77
                     679******.**********8...2.35**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.9E-142676IPR001471AP2/ERF domain
CDDcd000181.61E-172683No hitNo description
PROSITE profilePS5103223.7492784IPR001471AP2/ERF domain
SMARTSM003802.8E-342790IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-222785IPR016177DNA-binding domain
PRINTSPR003672.9E-102839IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-312985IPR001471AP2/ERF domain
PRINTSPR003672.9E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MAPKSSSRAE HEAGKGGGGG CWGAEPRLRG VRKRPWGRYA AEIRDPARKT RVWLGTFDTA  60
EQAARAYDAA ARRLRGPSAR TNFPAAAVQA VAQPETATAV SLSGSTVDES SLSFRDSPVG  120
TAAAEFMAPV SLDLRLGKPT VVAAQPYLFL DPRLAVTMAV TAPAPFAPPS SRHAAAVTGK  180
KAWDDVQSDT GSSESSVVDA APAVGVGIDL NLPPPAEMVM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-201784472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000573G0640
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0944770.0FP094477.1 Phyllostachys edulis cDNA clone: bphylf048e09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976762.11e-50ethylene-responsive transcription factor 4
RefseqXP_025823499.11e-50ethylene-responsive transcription factor 4-like
TrEMBLA0A1E5UZX77e-57A0A1E5UZX7_9POAL; Uncharacterized protein
STRINGOPUNC04G22340.19e-51(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118532537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53170.17e-23ethylene response factor 8