PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000573G0670
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 205aa    MW: 21360.1 Da    PI: 9.627
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000573G0670genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.6e-202474256
              AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56
                     + +GVr ++ +gr++AeIrd +     r +r++lg+f+taeeAa+a++aa+++++g+
  PH01000573G0670 24 RLRGVRKRP-WGRYAAEIRDpV-----RkARVWLGTFDTAEEAARAYDAAARRIRGH 74
                     679******.**********44.....55**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.6E-142374IPR001471AP2/ERF domain
CDDcd000181.39E-142383No hitNo description
SMARTSM003804.6E-322487IPR001471AP2/ERF domain
PROSITE profilePS5103223.4722481IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-222482IPR016177DNA-binding domain
PRINTSPR003672.2E-102536IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-302682IPR001471AP2/ERF domain
PRINTSPR003672.2E-104763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MAPKNQSPAD AAGNGGGGRE MEPRLRGVRK RPWGRYAAEI RDPVRKARVW LGTFDTAEEA  60
ARAYDAAARR IRGHAARTNF PADQACAAPP SKEAASASGS TVESSSSSRD SPAMAPASLG  120
LRLGMPAMVA AQPYLFVDPR LVVTVAVPAP APFVPPSSRH EAAVATKKAW EDAQSDTSSS  180
SLVDAAPAVG VGFDLNLPPP AEMVM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-2124831474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000573G0670
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0933380.0FP093338.1 Phyllostachys edulis cDNA clone: bphylf037b19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823499.12e-54ethylene-responsive transcription factor 4-like
TrEMBLA0A1E5UZX72e-56A0A1E5UZX7_9POAL; Uncharacterized protein
STRINGPavir.Gb00545.1.p3e-53(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118532537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.14e-18ethylene response factor 7