PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000585G0570
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family BES1
Protein Properties Length: 225aa    MW: 24393.3 Da    PI: 8.9797
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000585G0570genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF8221425.6e-44452005134
           DUF822   5 rkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..................eeae 80 
                      r++ ++E+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+r+AGw++++DGtt+r +s+p+                    a+
  PH01000585G0570  45 RRRCEREKERTKLRERHRRAITSRMLAGLRQHGNFPLPARADMNDVLAALARAAGWTIQPDGTTFRSSSQPPplppaqlwyisfllsnqrCDAK 138
                      8899**************************************************************9999876654433333333322111345 PP

           DUF822  81 aagssasaspesslq.sslkssalaspvesysaspksssfpspssldsislasa.......a 134
                        g+++ +s+e+++  ++l+s+a+ +p++s+++++++++++spsslds+ +a++        
  PH01000585G0570 139 CQGTFQVTSVETPTLtNALNSYAIGTPLDSQASVLQTDDSLSPSSLDSVVVAEQsiknenyG 200
                      6788999999999988999********************************99855554442 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.7E-4445211IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MSMKHPHPQV RDAEPSTSPP PPPDRRPRGF ASSAADTSAA APPPRRRCER EKERTKLRER  60
HRRAITSRML AGLRQHGNFP LPARADMNDV LAALARAAGW TIQPDGTTFR SSSQPPPLPP  120
AQLWYISFLL SNQRCDAKCQ GTFQVTSVET PTLTNALNSY AIGTPLDSQA SVLQTDDSLS  180
PSSLDSVVVA EQSIKNENYG NSSSVNSLNC LENDQVSKAL HLIG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000585G0570
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1200493e-70AK120049.1 Oryza sativa Japonica Group cDNA clone:J013000A07, full insert sequence.
GenBankAP0048863e-70AP004886.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0576F08.
GenBankAP0149583e-70AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622759.13e-72beta-amylase 8
TrEMBLA0A0E0JV315e-71A0A0E0JV31_ORYPU; Beta-amylase
TrEMBLA0A0E0JV324e-71A0A0E0JV32_ORYPU; Beta-amylase
TrEMBLA0A0E0JV332e-71A0A0E0JV33_ORYPU; Beta-amylase
TrEMBLQ0E4972e-73Q0E497_ORYSJ; Beta-amylase
STRINGOS02T0129600-013e-74(Oryza sativa)
STRINGOPUNC02G01770.18e-72(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21413663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.16e-24beta-amylase 2