PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000601G0200
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GRAS
Protein Properties Length: 508aa    MW: 54372.9 Da    PI: 6.2668
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000601G0200genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS309.57.5e-951005062374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfs 94 
                       +lLlecA+av+ +d +++q+l++ l+elasp+gd  q+la+yf+++L arl+ s++++ ++l++ ++++ +s e++  + l f+e+sP+  f+
  PH01000601G0200 100 AQLLLECARAVAGNDSQRVQQLMWMLNELASPYGDVDQKLASYFLQGLFARLTTSGPRTLRTLAAASDRN-TSFESTRRTALkFQELSPWTSFG 192
                      589************************************************************9888874.444444444446*********** PP

             GRAS  95 hltaNqaIleavege............ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg...skeeleetgerLakfAeel 172
                      h++aN aIle++ ++            +r+Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v++ ++     ++ ++e+g+rL++fA+ +
  PH01000601G0200 193 HVAANGAILESFLEAaaagasssssqlQRLHILDLSNTFCTQWPTLLEALATRSsDDTPHLSITTVVPTAAPstaAQRVMREIGQRLERFARLM 286
                      **********98766666778888888999************************8889********996555777999**************** PP

             GRAS 173 gvpfefnvlvak.rledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nse.......... 251
                      gvpf+f+++++  +l++l+l+ L++++     alaVn+v +l  +   s+  +  rd+++  +++l+++v++vve+ead+  se          
  PH01000601G0200 287 GVPFRFRAVHHAgDLAELDLDGLDLREggaTTALAVNCVNALRGVA--SGGARR-RDAFVASLRRLEARVFTVVEEEADLvASEsdasaeeagt 377
                      ********97767**************888889************8..455444.89*********************9965558999****** PP

             GRAS 252 ..sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                         F++ f+e l+++sa +dsle+++p++s+er  +Er+ +gr+iv++v+   +e+ er+et + W +r+++aGF+pv++se++++++++llr+
  PH01000601G0200 378 eaAFMKVFSEGLRFFSAYMDSLEESFPKTSNERLALERA-VGRAIVDLVSSPASESAERRETGALWARRMRSAGFSPVAFSEDVVDDVRSLLRR 470
                      ***************************************.****************************************************** PP

             GRAS 344 vksdgyrveee......sgslvlgWkdrpLvsvSaWr 374
                      +  +g+++ e        + ++l Wk++p+v++SaWr
  PH01000601G0200 471 YR-EGWSMREAgtddaaAAGVFLAWKEQPVVWTSAWR 506
                      **.8888886666666577788**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.34373481IPR005202Transcription factor GRAS
PfamPF035142.6E-92100506IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009956Biological Processradial pattern formation
GO:0045930Biological Processnegative regulation of mitotic cell cycle
GO:0048366Biological Processleaf development
GO:0055072Biological Processiron ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MKLEHKSQGK FNGSKFKYSE VPLPRPAGAG AHAAAAFVDV GARSHAASVD LVHRGLFEAA  60
DFSFPPVDLN IDFGSPASSS GAGGGTASSS GGGGAGRWAA QLLLECARAV AGNDSQRVQQ  120
LMWMLNELAS PYGDVDQKLA SYFLQGLFAR LTTSGPRTLR TLAAASDRNT SFESTRRTAL  180
KFQELSPWTS FGHVAANGAI LESFLEAAAA GASSSSSQLQ RLHILDLSNT FCTQWPTLLE  240
ALATRSSDDT PHLSITTVVP TAAPSTAAQR VMREIGQRLE RFARLMGVPF RFRAVHHAGD  300
LAELDLDGLD LREGGATTAL AVNCVNALRG VASGGARRRD AFVASLRRLE ARVFTVVEEE  360
ADLVASESDA SAEEAGTEAA FMKVFSEGLR FFSAYMDSLE ESFPKTSNER LALERAVGRA  420
IVDLVSSPAS ESAERRETGA LWARRMRSAG FSPVAFSEDV VDDVRSLLRR YREGWSMREA  480
GTDDAAAAGV FLAWKEQPVV WTSAWRP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-1589750785474Protein SHORT-ROOT
5b3h_B1e-1599750731420Protein SHORT-ROOT
5b3h_E1e-1599750731420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. {ECO:0000269|PubMed:17446396}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000601G0200
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796633.10.0protein SHORT-ROOT 2-like
SwissprotQ8H2X80.0SHR1_ORYSJ; Protein SHORT-ROOT 1
TrEMBLA0A3L6SGA30.0A0A3L6SGA3_PANMI; Uncharacterized protein
STRINGOMERI07G17430.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-128GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]