PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000604G0620
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GATA
Protein Properties Length: 132aa    MW: 14622.9 Da    PI: 9.6704
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000604G0620genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.55e-202458135
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                     C+ C+ttkTplWR gp g+k+LCnaCG++yrk+++
  PH01000604G0620 24 CADCHTTKTPLWRGGPTGPKSLCNACGIRYRKRRR 58
                     ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.101.2E-161874IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011413.1911854IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.76E-131857No hitNo description
SMARTSM004013.5E-181870IPR000679Zinc finger, GATA-type
CDDcd002022.96E-152359No hitNo description
PROSITE patternPS0034402449IPR000679Zinc finger, GATA-type
PfamPF003207.9E-182458IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MDPSPPVDKV DPDECTASGE PKACADCHTT KTPLWRGGPT GPKSLCNACG IRYRKRRRQA  60
LGLEAAAEGA EQQQQKKKSK KEDEVTVELH MVGFGKDVVL KQRRRMRRRK CLGEEERAAI  120
LLMALSSGVI YA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15357RKRRR
2101107QRRRMRR
3102109RRRMRRRK
4103108RRMRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00554DAPTransfer from AT5G49300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000604G0620
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0953990.0FP095399.1 Phyllostachys edulis cDNA clone: bphylf037e06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631979.12e-60GATA transcription factor 16
TrEMBLA0A0E0D9388e-60A0A0E0D938_9ORYZ; Uncharacterized protein
STRINGOMERI03G36180.11e-60(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.12e-25GATA transcription factor 16