PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000606G0250
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MIKC_MADS
Protein Properties Length: 201aa    MW: 23479.1 Da    PI: 9.1564
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000606G0250genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.51.5e-27959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     k ienk+ rqvtfskRr g+lKKA+E+SvLCdaev +i+fs++gkl ey++
  PH01000606G0250  9 KLIENKIYRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTRGKLCEYAT 59
                     569**********************************************86 PP
2K-box103.92e-3485181399
            K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                      ++  +s+e++++ +++ e++kLk+++e++q+ q++l+GedLesL+lkeLqqLeqqLe+slk+iRs+K++l+le+i++l kkek+lqeen+ L+k
  PH01000606G0250  85 EKVLVSAESETQGNWCDEYRKLKAKVETIQKCQKQLMGEDLESLNLKELQQLEQQLESSLKHIRSRKSQLMLESISQLEKKEKSLQEENTVLQK 178
                      5666778899999********************************************************************************9 PP

            K-box  97 kle 99 
                      +l 
  PH01000606G0250 179 ELV 181
                      985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.319161IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-36160IPR002100Transcription factor, MADS-box
CDDcd002652.15E-34284No hitNo description
SuperFamilySSF554554.32E-30296IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003198.5E-231157IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.3E-2992180IPR002487Transcription factor, K-box
PROSITE profilePS5129717.1196186IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MGRGKVQLKL IENKIYRQVT FSKRRSGLLK KAHEISVLCD AEVGLIVFST RGKLCEYATD  60
SWCIFLLFHS MDKILERYER YSYAEKVLVS AESETQGNWC DEYRKLKAKV ETIQKCQKQL  120
MGEDLESLNL KELQQLEQQL ESSLKHIRSR KSQLMLESIS QLEKKEKSLQ EENTVLQKEL  180
VEKQVHKQQV QRDQTLPRPS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-18182173MEF2 CHIMERA
6byy_B3e-18182173MEF2 CHIMERA
6byy_C3e-18182173MEF2 CHIMERA
6byy_D3e-18182173MEF2 CHIMERA
6bz1_A3e-18182173MEF2 CHIMERA
6bz1_B3e-18182173MEF2 CHIMERA
6bz1_C3e-18182173MEF2 CHIMERA
6bz1_D3e-18182173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May be involved in the control of flowering time. {ECO:0000269|Ref.9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000606G0250
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1971980.0FJ197198.1 Phyllostachys praecox truncated MADS box protein (MADS2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981740.14e-97MADS-box transcription factor 14 isoform X1
RefseqXP_004981741.14e-97MADS-box transcription factor 14 isoform X2
SwissprotQ10CQ18e-94MAD14_ORYSJ; MADS-box transcription factor 14
TrEMBLA0A1D8F0I91e-141A0A1D8F0I9_9POAL; MADs15 protein
STRINGBRADI1G08340.14e-95(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115137113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.18e-61MIKC_MADS family protein
Publications ? help Back to Top
  1. Jia H, et al.
    Characterization and transcriptional profiles of two rice MADS-box genes.
    Plant Sci., 2000. 155(2): p. 115-122
    [PMID:10814814]
  2. Jang S,An K,Lee S,An G
    Characterization of tobacco MADS-box genes involved in floral initiation.
    Plant Cell Physiol., 2002. 43(2): p. 230-8
    [PMID:11867703]
  3. Kim SL,Lee S,Kim HJ,Nam HG,An G
    OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
    Plant Physiol., 2007. 145(4): p. 1484-94
    [PMID:17951465]
  4. Li D, et al.
    Functional characterization of rice OsDof12.
    Planta, 2009. 229(6): p. 1159-69
    [PMID:19198875]
  5. Tanaka N, et al.
    The COP1 ortholog PPS regulates the juvenile-adult and vegetative-reproductive phase changes in rice.
    Plant Cell, 2011. 23(6): p. 2143-54
    [PMID:21705640]
  6. Kobayashi K, et al.
    Inflorescence meristem identity in rice is specified by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEPALLATA MADS box gene.
    Plant Cell, 2012. 24(5): p. 1848-59
    [PMID:22570445]
  7. Wei X, et al.
    Fine mapping of BH1, a gene controlling lemma and palea development in rice.
    Plant Cell Rep., 2013. 32(9): p. 1455-63
    [PMID:23689259]
  8. Su L,Shan JX,Gao JP,Lin HX
    OsHAL3, a Blue Light-Responsive Protein, Interacts with the Floral Regulator Hd1 to Activate Flowering in Rice.
    Mol Plant, 2016. 9(2): p. 233-244
    [PMID:26537047]
  9. Wu F, et al.
    The ABCs of flower development: mutational analysis of AP1/FUL-like genes in rice provides evidence for a homeotic (A)-function in grasses.
    Plant J., 2017. 89(2): p. 310-324
    [PMID:27689766]