PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000606G0580

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

MYB_related

Protein Properties

Length: 748aa MW: 84917.9 Da PI: 8.6989

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000606G0580	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.7	8.3e-11	111	151	4	45
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W ++E+ ll+++++++G g+W+ +a+++g ++ qc++++ PH01000606G0580 111 WNADEEILLLEGIEMYGLGNWAEVAEHVG-TKGKAQCIDHYT 151 ***************************.9*******96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00291	1.6E-10	47	92	IPR000433	Zinc finger, ZZ-type
Pfam	PF00569	4.5E-9	50	90	IPR000433	Zinc finger, ZZ-type
SuperFamily	SSF57850	3.88E-14	51	114	No hit	No description
CDD	cd02335	7.25E-27	51	99	No hit	No description
PROSITE profile	PS50135	10.824	51	94	IPR000433	Zinc finger, ZZ-type
PROSITE pattern	PS01357	0	53	80	IPR000433	Zinc finger, ZZ-type
SuperFamily	SSF46689	2.47E-11	104	157	IPR009057	Homeodomain-like
PROSITE profile	PS51293	21.483	106	158	IPR017884	SANT domain
SMART	SM00717	9.8E-10	107	156	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-10	110	151	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.1E-7	111	153	IPR009057	Homeodomain-like
CDD	cd00167	8.91E-10	111	152	No hit	No description
SuperFamily	SSF46689	1.06E-20	426	517	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 748 aa Download sequence Send to blast
MGRSRGVPNS GDDDTSHRSK RRRVASSGDA SDSLSAACGG AGEGGGKKAL YHCNYCNKDI 60 SGKIRIKCSK CPDFDLCVEC FSVGAEVTPH RSNHPYRVMD NLSFPLICPD WNADEEILLL 120 EGIEMYGLGN WAEVAEHVGT KGKAQCIDHY TTAYMNSPCY PLPDMSHVNG KNRKELLAMA 180 KVQGESKKGA NKKASSAGQF KDGANVAKVE DGHVDRSIGV KKPRYSADEG PSLTELSGYN 240 SKRQEFDPEY DNDAEQALAE MEFKETDSET DRELKLRVLR IYLSRLDERK RRKEFILERN 300 LLFPNPLEKD LTNEDKEVYH RYKVFMRFLS KEEHEALVRS VIEERKIRRR IQELQECRST 360 GCRTLAEAKI HIEQKRKKEY EMNAQKAKES GQLIPNTKAV HKTNRPMKIE IDGNLDPKKG 420 GSSLESGGRD SPKTTGHNSV KQWDDWDIVG LPGAELLSAS EKLLCCQNRL LPSHYLRMQE 480 VLMQEIFKGS VVKKEDAHVL FKVDPAKVDT VYDMVTKKLV RDDMGNYGDG GAKRLQPPTE 540 LHDWNKIVLG DLEKRIRKVK RELDSCQKGL LNQENVAREQ ILRYKLDRSE EQLDLYWKQR 600 SHVNWFDKGD RNTRSFHAFA SERRRHSRTR RLQRDDGSWG EGANQLKELI TNYFSTLFTS 660 SAGFANGALL QNVQAKVTPK MNEALSVEFP AAGVETAQWQ GQESETRGAK VSEIAFYDRP 720 NNKNIDKIIW IRRGYIGENV LLPKTFS*

Sequence ? help Back to Top

Protein Sequence Length: 748 aa Download sequence Send to blast

MGRSRGVPNS GDDDTSHRSK RRRVASSGDA SDSLSAACGG AGEGGGKKAL YHCNYCNKDI  60
SGKIRIKCSK CPDFDLCVEC FSVGAEVTPH RSNHPYRVMD NLSFPLICPD WNADEEILLL  120
EGIEMYGLGN WAEVAEHVGT KGKAQCIDHY TTAYMNSPCY PLPDMSHVNG KNRKELLAMA  180
KVQGESKKGA NKKASSAGQF KDGANVAKVE DGHVDRSIGV KKPRYSADEG PSLTELSGYN  240
SKRQEFDPEY DNDAEQALAE MEFKETDSET DRELKLRVLR IYLSRLDERK RRKEFILERN  300
LLFPNPLEKD LTNEDKEVYH RYKVFMRFLS KEEHEALVRS VIEERKIRRR IQELQECRST  360
GCRTLAEAKI HIEQKRKKEY EMNAQKAKES GQLIPNTKAV HKTNRPMKIE IDGNLDPKKG  420
GSSLESGGRD SPKTTGHNSV KQWDDWDIVG LPGAELLSAS EKLLCCQNRL LPSHYLRMQE  480
VLMQEIFKGS VVKKEDAHVL FKVDPAKVDT VYDMVTKKLV RDDMGNYGDG GAKRLQPPTE  540
LHDWNKIVLG DLEKRIRKVK RELDSCQKGL LNQENVAREQ ILRYKLDRSE EQLDLYWKQR  600
SHVNWFDKGD RNTRSFHAFA SERRRHSRTR RLQRDDGSWG EGANQLKELI TNYFSTLFTS  660
SAGFANGALL QNVQAKVTPK MNEALSVEFP AAGVETAQWQ GQESETRGAK VSEIAFYDRP  720
NNKNIDKIIW IRRGYIGENV LLPKTFS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6cw2_C	2e-39	51	166	5	120	Transcriptional adapter 2
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	19	23	KRRRV
2	288	293	RKRRKE

Functional Description ? help Back to Top
Source	Description
UniProt	Required for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000606G0580

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK066914	0.0	AK066914.1 Oryza sativa Japonica Group cDNA clone:J013089I21, full insert sequence.
GenBank	AK072597	0.0	AK072597.1 Oryza sativa Japonica Group cDNA clone:J023128E10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003559501.1	0.0	transcriptional adapter ADA2
Swissprot	Q75LL6	0.0	TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBL	I1GN91	0.0	I1GN91_BRADI; Transcriptional adapter
STRING	BRADI1G08470.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7708	38	47

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]