PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000616G0330
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family DBB
Protein Properties Length: 212aa    MW: 21867.2 Da    PI: 4.7189
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000616G0330genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.52e-06545639
         zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                     C+ +++ e+   C  ++  lC+ C  + H+        H+v
  PH01000616G0330  5 CDACGQAEAAVLCCADEAALCRRCDAAVHSAnklagkhHRV 45
                     *****************************668899996655 PP
2zf-B_box292.1e-0970109437
         zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                      ++C+ ++ek+  +fC +++ llC++C ++ H        H
  PH01000616G0330  70 PVCDICQEKRGYFFCLEDRALLCRSCDVAVHTTspyvstH 109
                      68***************************99555666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.584147IPR000315B-box-type zinc finger
CDDcd000211.20E-6547No hitNo description
SMARTSM003362.7E-7547IPR000315B-box-type zinc finger
SMARTSM003369.5E-1367114IPR000315B-box-type zinc finger
SuperFamilySSF578455.8E-568108No hitNo description
CDDcd000219.70E-970114No hitNo description
PfamPF006431.1E-770110IPR000315B-box-type zinc finger
PROSITE profilePS501199.37171114IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MKIGCDACGQ AEAAVLCCAD EAALCRRCDA AVHSANKLAG KHHRVALLPS GGGLSPACSS  60
SPDADDGGHP VCDICQEKRG YFFCLEDRAL LCRSCDVAVH TTSPYVSTHR RFLITGVRIG  120
GAQDHIPGSD VSGTAGAVVS SSSSSGDGSN NLPSSSNLII PDNGRPSEAG LGEEEDIGRQ  180
QQWPWSDIFA DGVGMEQCYP GLSEPGSSSL TG
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000616G0330
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0918910.0FP091891.1 Phyllostachys edulis cDNA clone: bphylf050h06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167650.11e-88B-box zinc finger protein 22-like
SwissprotQ9SYM22e-43BBX22_ARATH; B-box zinc finger protein 22
TrEMBLF2D3C61e-93F2D3C6_HORVV; Predicted protein
STRINGMLOC_55203.12e-94(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121512528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.17e-45light-regulated zinc finger protein 1