PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000623G0440
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ARF
Protein Properties Length: 1187aa    MW: 132010 Da    PI: 8.8951
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000623G0440genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.22.1e-20157244183
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                      f+k+lt sd++++g +++p++ ae++       ++++ +  +l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F 
  PH01000623G0440 157 FCKTLTASDTSTHGGFSVPRRAAERIfprldfsMQPPVQ--ELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFI 244
                      99*****************************95444444..8***********************************************8 PP
2Auxin_resp119.33.1e-39256339183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+++s F+++YnPras+seFv++++k++ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+ S+Wr+L+
  PH01000623G0440 256 AAHAAANNSQFTIFYNPRASPSEFVIPFAKYQKAVYgNQFSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKSSQWRNLQ 339
                      79**********************************9*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-36147251IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.8E-34150258IPR015300DNA-binding pseudobarrel domain
CDDcd100171.33E-17156243No hitNo description
SMARTSM010194.6E-15157256IPR003340B3 DNA binding domain
PROSITE profilePS5086310.644157256IPR003340B3 DNA binding domain
PfamPF023622.8E-18157244IPR003340B3 DNA binding domain
PfamPF065074.9E-34256339IPR010525Auxin response factor
PROSITE profilePS5174519.5449911074IPR000270PB1 domain
SuperFamilySSF542778.04E-59951059No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1187 aa     Download sequence    Send to blast
MAAPASSGGG GGEAEGEGRR TKVNQELWYA CAGPLVALPP AGSLVVYFPQ GHSEQFCISC  60
LVLVANCSRA GNSSLRLSPV AASMRKDAHA QIPSYRNLPS KLICILHNVT MHADPDTDEV  120
YARMTLQPVS NVTQCDKDIL LASELALKQT RPQTEFFCKT LTASDTSTHG GFSVPRRAAE  180
RIFPRLDFSM QPPVQELQAR DLHDNVWTFR HIYRGQPKRH LLTTGWSLFV SGKRLLAGDS  240
VLFISDSMHI GILAAAAHAA ANNSQFTIFY NPRASPSEFV IPFAKYQKAV YGNQFSLGMR  300
FRMMFETEES GTRRYMGTIT GISDLDPVRW KSSQWRNLQV AWDEAAPSER RTRVSLWEME  360
PVIAPFFIYP SPLFTAKRAR QPGMTDDETY EMENLVKRTM PWLGEEICKK DLNTQNSIVP  420
GLNLVQWMNM QQNPSLAGTV MQPELLNSLA GKPVQNLSAA DISRQISFQP QFLQQNNIHF  480
NTSLLPQQNQ QTEQLAKVIA TPNQLGNVIV PQKAVQDCNF DQKQHVVTQS VQGSQPKINI  540
AQPQLVVQAQ FQQPQVTLQA QLQQPQVVVQ AQLQQQQPLV QSHTVLQGGL QQIQLLQQPQ  600
QQPHLQHQPQ QQLQPQHHQQ VQHSVQEQQQ IKIQPVHASS DANMNTQLSD HQMKLQLLKA  660
LQPQQPLILE QQKMLLELQQ QLVNSQSTPQ QCAQGTTQTV GIHNSNTIQY PTQQKAQPHQ  720
PVQDLPGNAI PIAKSDIITS MGASSLHAAG GMQLLKTDDV PSLSTSPSTN SNPVLLQSIP  780
SSSKNQSLPT AAKTSQSSVV LGPTIEQDVK PYQSVKPTVM IPTMAEQRPA TGQDYINNNP  840
QMDYLDTSSS ATSVCLSQAD GSLQQNFPPS SFNHHQLLRD TVPDSEFQVT DPRNNLLFGV  900
NIDGQLGLPL NADALLANNI ETEKYTDQMP GNGISNYISS KDSQQELSSS MISHSFGVAD  960
MTFNSIDSAI NDTPFLNRNS RASAPAHQRM RTYTKVHKRG AVGRSIDINR YSGYDELKHD  1020
IARMFGIEGQ LGDQNRVGWK LVYEDHEKDV LLVGDDPWEG KPVHSRLKKQ YADNLLSALF  1080
PEQKNGPTKK PHTIATQTNP KRIGAEAEPK KMRRNPGGRS CGGSPKEMWR NPIEAMSKAW  1140
SREAPGETQR AWVGVEMARS RGSEVLRIRR RRRLRRMDEP SRSRSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1401936047388Auxin response factor 5
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
111661174RIRRRRRLR
211681175RRRRRLRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000623G0440
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3746130.0AK374613.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3070K03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574778.20.0auxin response factor 21
TrEMBLA0A0Q3M3D40.0A0A0Q3M3D4_BRADI; Auxin response factor
STRINGBRADI3G40437.20.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19