PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000626G0040
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ARF
Protein Properties Length: 694aa    MW: 77548.6 Da    PI: 5.2032
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000626G0040genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.49.8e-22116216198
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f+k+ltpsd++++g +++ +++a+e+      +++ + +++l+ +d++g +W++k+iyr++++r +lt+GW+ Fv +++L +gD +v    +++
  PH01000626G0040 116 FCKILTPSDTSTHGGFSVLRRHANEClppldmSMP-TPTQELITKDLHGSEWRFKHIYRGQPRRNLLTTGWSTFVTSKKLIAGDAFVYL--RSE 206
                      99****************************96444.45569999******************************************999..447 PP

                      EE..EEEEE- CS
               B3  89 efelvvkvfr 98 
                      ++e +v+v+r
  PH01000626G0040 207 TGEQRVGVRR 216
                      7778999997 PP
2Auxin_resp93.43.7e-31242323183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+ha++t+s+F v+Y+Pr s+s+++v+v+k+++a k  ++vG++fkm+fe+ed++ +++sGt+v+  dl+p +W++S+W+sLk
  PH01000626G0040 242 ASHAIKTNSMFLVYYRPRLSQSQYIVSVNKYLEASKLGFTVGTKFKMSFEGEDVPVKKFSGTIVDDGDLSP-QWSGSEWKSLK 323
                      789********************************************************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-36105245IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-34110231IPR015300DNA-binding pseudobarrel domain
CDDcd100171.68E-16114216No hitNo description
SMARTSM010196.4E-17116218IPR003340B3 DNA binding domain
PfamPF023626.7E-20116216IPR003340B3 DNA binding domain
PROSITE profilePS5086311.152116218IPR003340B3 DNA binding domain
PfamPF065072.5E-27242323IPR010525Auxin response factor
PfamPF023095.0E-6581625IPR033389AUX/IAA domain
SuperFamilySSF542772.85E-9587662No hitNo description
PROSITE profilePS5174525.283589678IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2409.1E-4590654No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MAQARDPELF AELWRACAGP LVEVPQTDER VFYFLQGHLE QLQQPTDPAL LAEQIKMFQV  60
PYKILCKVVN VELKAETETD EVFAQITLQP DPDQNNLPTV PDPSLPELPR PVVHSFCKIL  120
TPSDTSTHGG FSVLRRHANE CLPPLDMSMP TPTQELITKD LHGSEWRFKH IYRGQPRRNL  180
LTTGWSTFVT SKKLIAGDAF VYLRSETGEQ RVGVRRLVQK QSTMPTSVIS SQSMHLGVLA  240
SASHAIKTNS MFLVYYRPRL SQSQYIVSVN KYLEASKLGF TVGTKFKMSF EGEDVPVKKF  300
SGTIVDDGDL SPQWSGSEWK SLKVQWDEVT NSNGPERVSP WDIERFDGSA PTINVPLQSS  360
MKNKRPREPS ECLDIQSLEP TQEFWLSGMP QQHEKTGVGS SEPNCISGHQ VVWPSERPVY  420
GAMSSSSVCQ NPVLLESWLK DFNSSSKGVS PTLSDISQKL FQVTSNESRV APWPALSAYQ  480
AEEPTSKLSC NTAICSYQTE EVAPNLSKVV EETKEPSMFR LFGVNLMKHI NSTATADKAS  540
VEAGETATRA GGSFEDSAQL SALSKVTKDH IVVNESPREI QSHQSYTARN RIKVQMHGNA  600
VGRAVDLASL DGYEQLMGEL EEMFDIKDLK HKWKVTFTDD EGDTMEVGDD PWLEFCQMVR  660
KIVIYPIEDE KKIEPHQKLL SAAAPEQDPN TEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-144934419353Auxin response factor 1
4ldw_A1e-144934419353Auxin response factor 1
4ldw_B1e-144934419353Auxin response factor 1
4ldx_A1e-144934419353Auxin response factor 1
4ldx_B1e-144934419353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000626G0040
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under light or dark conditions. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622434.10.0auxin response factor 1
SwissprotQ5NB850.0ARFA_ORYSJ; Auxin response factor 1
TrEMBLA0A0E0BZN80.0A0A0E0BZN8_9ORYZ; Auxin response factor
STRINGOMERI01G08660.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]