PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000642G0890
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bZIP
Protein Properties Length: 164aa    MW: 17897.2 Da    PI: 8.215
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000642G0890genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1491.4e-1593147559
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                      ++ +r++kNRe+A rsR+RK+a+++eLe++v  L  eN +Lk + ++l+ e+a+l
  PH01000642G0890  93 RKNIRMMKNRESALRSRARKRAYVQELEKEVRRLVDENLKLKRQCKQLRTEMASL 147
                      7899**********************************************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.2E-1689148No hitNo description
SMARTSM003382.1E-1489153IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.87591147IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.57E-1393148No hitNo description
CDDcd147071.32E-1893140No hitNo description
PfamPF001706.0E-1393148IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MSMSEEAGNG SPQLSLSGCS SLFSISSSST GAHHNSNDVV NVAAAAARLK LPPPRLSLCV  60
GAGVGEEEEE EELQLDLQVG VTSCSCGGDD DERKNIRMMK NRESALRSRA RKRAYVQELE  120
KEVRRLVDEN LKLKRQCKQL RTEMASLIQP AAKSSLKRTS STQF
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000642G0890
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0982440.0FP098244.1 Phyllostachys edulis cDNA clone: bphylf047n22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966480.17e-41protein FD
TrEMBLA0A2S3HG732e-39A0A2S3HG73_9POAL; Uncharacterized protein
TrEMBLA0A2T7DU082e-39A0A2T7DU08_9POAL; Uncharacterized protein
TrEMBLA0A3B6SLF82e-39A0A3B6SLF8_WHEAT; Uncharacterized protein
TrEMBLA0A3L6PES22e-39A0A3L6PES2_PANMI; Protein FD-like
TrEMBLA0A446YZ522e-39A0A446YZ52_TRITD; Uncharacterized protein
TrEMBLK3XZQ11e-39K3XZQ1_SETIT; Uncharacterized protein
STRINGPavir.J04759.1.p3e-40(Panicum virgatum)
STRINGSi007412m3e-40(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40173072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35900.16e-18bZIP family protein