PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000643G0300
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 417aa    MW: 43976.8 Da    PI: 7.3055
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000643G0300genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.0001389107321
                      ETTTTEEESSHHHHHHHHH CS
          zf-C2H2   3 CpdCgksFsrksnLkrHir 21 
                      C+ Cgk Fs++ +L  H+r
  PH01000643G0300  89 CGECGKLFSSWRSLFGHMR 107
                      ******************8 PP
2zf-C2H216.32.8e-05265287123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+Cp Cgk+Fs+   L  H  +H
  PH01000643G0300 265 YECPGCGKVFSSYQALGGHRASH 287
                      99***********9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.062224IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.47E-10224No hitNo description
PfamPF139123.7E-6224IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.533229IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.9E-5225IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280424IPR007087Zinc finger, C2H2
SuperFamilySSF576673.47E-1082109No hitNo description
SMARTSM003550.0987109IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.13887114IPR007087Zinc finger, C2H2
PfamPF139121.8E-489109IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.5E-489110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.4E-4260288IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.031265287IPR015880Zinc finger, C2H2-like
PfamPF139122.2E-11265289IPR007087Zinc finger, C2H2
SuperFamilySSF576675.4E-6265287No hitNo description
PROSITE profilePS5015710.512265287IPR007087Zinc finger, C2H2
PROSITE patternPS000280267287IPR007087Zinc finger, C2H2
SuperFamilySSF576675.4E-6343370No hitNo description
SMARTSM003550.2348370IPR015880Zinc finger, C2H2-like
PfamPF139122.7E-10348370IPR007087Zinc finger, C2H2
PROSITE profilePS501579.66348370IPR007087Zinc finger, C2H2
PROSITE patternPS000280350370IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MHRCKVCGKG FSCGRSLGGH MRSHISLGEA VAEVDANDEL KRFSVNGGRS SNGVVGYGLR  60
ENPKKTRRLS DFADEEEEDG GGGGEHKACG ECGKLFSSWR SLFGHMRCHA SGSRDHNEGD  120
VDVEEEFFSE EADAEEEMVA PTEPPVPAAV TVIAAPPRRR RRSMRAARAA AGAERVREGA  180
GGRRALPPDA LARHRPVELA GQGGAQEDDG EAGVPPKKRY GDAKIKNGSV IDVGKSKKRR  240
TNYYTPDSSL PKKQCEVVPT KRSGYECPGC GKVFSSYQAL GGHRASHKRI STSCSAPKVA  300
SVAAAGPAPE PSIETYTSFS TLSPSASPDS VDVGIGAKKS AAQAVEKFEC PVCFRVFASG  360
QALGGHKRSH VMAGASSDDG KLYDSASGNT EQEEEHPVAV AGFLDLNFPP SASEDA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000643G0300
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038401e-42AP003840.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1634_B10.
GenBankAP0039151e-42AP003915.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1579_C03.
GenBankAP0149631e-42AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021308538.11e-124zinc finger protein 865
TrEMBLA0A3B6C3871e-131A0A3B6C387_WHEAT; Uncharacterized protein
TrEMBLA0A446M3281e-131A0A446M328_TRITD; Uncharacterized protein
STRINGTraes_2BS_ACA52BC08.11e-131(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.11e-18C2H2-like zinc finger protein