PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000644G0440
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bZIP
Protein Properties Length: 259aa    MW: 28337 Da    PI: 9.4596
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000644G0440genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.71.9e-11118149334
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeek 34 
                      + k  rr+++NReAAr+sR+RKka+i++Le+ 
  PH01000644G0440 118 DAKTLRRLAQNREAARKSRLRKKAYIQNLETS 149
                      67999************************973 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.4E-8116183IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.8E-10116166No hitNo description
PROSITE profilePS502178.554118155IPR004827Basic-leucine zipper domain
PfamPF001701.3E-8119159IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.88E-8122171No hitNo description
PROSITE patternPS000360123138IPR004827Basic-leucine zipper domain
PfamPF141444.2E-30185257IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MAELDHLFLY LSSQDQTSVQ EQPLTLNIFP SQPMHAVEPS PKGSMGTNSA SGMVADSSKR  60
PPSNQPSSRP VPAPEQLASG KVDGKAAVKR EVASGSGGKQ QGGTPPSTSE HEGPRTPDAK  120
TLRRLAQNRE AARKSRLRKK AYIQNLETSR IRLSQLEQET QRSRTQAVWF DGEYARWLDE  180
HHEMMSYLRA AVGEHAADGH LRQLVDAAVA HHGVLMELKA ALAKADVFHL VSGTWLSPAE  240
RCFLWIGGFR PSELIKVC*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000644G0440
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626935.11e-107transcription factor TGAL9-like isoform X1
SwissprotQ0E3421e-110TGAL9_ORYSJ; Transcription factor TGAL9
TrEMBLB8AJB31e-108B8AJB3_ORYSI; Uncharacterized protein
TrEMBLI1NY701e-109I1NY70_ORYGL; Uncharacterized protein
STRINGONIVA02G08860.11e-108(Oryza nivara)
STRINGORGLA02G0067600.11e-109(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129722126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.33e-72bZIP family protein
Publications ? help Back to Top
  1. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]