PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000653G0110

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

NAC

Protein Properties

Length: 218aa MW: 25201.2 Da PI: 8.1884

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000653G0110	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.3	7.4e-54	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeelv++yLk+kv+g+++el ++i+evd+yk+ePw+L k + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd+++ PH01000653G0110 6 LPPGFRFHPTDEELVNYYLKRKVHGRSIEL-DIIPEVDLYKCEPWELAeKsFLPSRDPEWYFFGPRDRKYPNGCRTNRATRAGYWKSTGKDRRI 98 79**************************.99**********84335556888********************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +g+kktLv++kgrap+g +t+Wvmheyr+ PH01000653G0110 99 NY-QNRSIGMKKTLVYHKGRAPQGIRTSWVMHEYRI 133 9.8899**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-62	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	58.306	6	156	IPR003441	NAC domain
Pfam	PF02365	7.8E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MAPVGLPPGF RFHPTDEELV NYYLKRKVHG RSIELDIIPE VDLYKCEPWE LAEKSFLPSR 60 DPEWYFFGPR DRKYPNGCRT NRATRAGYWK STGKDRRINY QNRSIGMKKT LVYHKGRAPQ 120 GIRTSWVMHE YRIEESECEN TMGIQDSYGL CRVFKKNVPF GEFEKQGECS SSQAKGNEEQ 180 VTNFGEAGQS SGANENDKDN SWMQFISDDL WSTNKTK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-53	1	157	12	166	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-53	1	157	12	166	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-53	1	157	12	166	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-53	1	157	12	166	NO APICAL MERISTEM PROTEIN
3swm_A	2e-53	1	157	15	169	NAC domain-containing protein 19
3swm_B	2e-53	1	157	15	169	NAC domain-containing protein 19
3swm_C	2e-53	1	157	15	169	NAC domain-containing protein 19
3swm_D	2e-53	1	157	15	169	NAC domain-containing protein 19
3swp_A	2e-53	1	157	15	169	NAC domain-containing protein 19
3swp_B	2e-53	1	157	15	169	NAC domain-containing protein 19
3swp_C	2e-53	1	157	15	169	NAC domain-containing protein 19
3swp_D	2e-53	1	157	15	169	NAC domain-containing protein 19
4dul_A	2e-53	1	157	12	166	NAC domain-containing protein 19
4dul_B	2e-53	1	157	12	166	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00363	DAP	Transfer from AT3G17730	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000653G0110

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC137596	1e-108	AC137596.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 9 clone OSJNBb0031H05, complete sequence.
GenBank	AP005564	1e-108	AP005564.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1228_C03, complete sequence.
GenBank	AP014965	1e-108	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBank	CP012617	1e-108	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020186594.1	1e-149	NAC domain-containing protein 86-like
Swissprot	Q9FFI5	2e-87	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A0D9XGG3	1e-151	A0A0D9XGG3_9ORYZ; Uncharacterized protein
STRING	LPERR09G14720.1	1e-152	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3713	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	1e-113	NAC domain containing protein 57

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]