PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000655G0670
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 269aa    MW: 29619.3 Da    PI: 4.5172
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000655G0670genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-17141185347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WTteE+ l++++ +++G+g+Wkt ar++ k+R++ q+ s++qk+
  PH01000655G0670 141 NWTTEEHRLFLEGLEKHGKGRWKTLAREFVKTRSPTQIASHFQKF 185
                      8******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.322977IPR001005SANT/Myb domain
SuperFamilySSF466892.62E-83175IPR009057Homeodomain-like
PROSITE profilePS500906.2263375IPR017877Myb-like domain
CDDcd001672.71E-43375No hitNo description
Gene3DG3DSA:1.10.10.601.4E-43372IPR009057Homeodomain-like
PROSITE profilePS5129417.396134190IPR017930Myb domain
SuperFamilySSF466893.93E-15136191IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-11138188IPR006447Myb domain, plants
SMARTSM007171.6E-11138188IPR001005SANT/Myb domain
PfamPF002492.8E-13141184IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-12141184IPR009057Homeodomain-like
CDDcd001671.32E-9141185No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MYADTTSASD GVPPPPAPAP APELVPVPMW RLWTRQEDKL LEMLLCRLYP RWDRIAALLG  60
DTTPAQVCQR YECVVAELRR VLEAPGVETP PEWDWDLQEA AAAPAGGEAD ASAPASTTGG  120
EILEERGKKG KRDGKRSKSV NWTTEEHRLF LEGLEKHGKG RWKTLAREFV KTRSPTQIAS  180
HFQKFAIRQQ KIELKQCKRA SIHDINDPNI IPPAVADHPS VAADDDDDEL AAEDELVLTT  240
IDESAGEDDE LVTIDESARE DGLGVLVK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000655G0670
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236797.16e-63transcription factor MYBS1
TrEMBLB8AIL52e-47B8AIL5_ORYSI; Uncharacterized protein
STRINGORGLA02G0154300.15e-48(Oryza glaberrima)
STRINGOBART02G17870.15e-48(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144181825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.14e-21Homeodomain-like transcriptional regulator