PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000659G0050
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 302aa    MW: 32508.8 Da    PI: 4.4533
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000659G0050genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY79.92.8e-25113172258
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                      +Dg+ WrKYGqK++++s++pr Y+rCt++   gC+++++v++s++dp++ +itY geH++
  PH01000659G0050 113 EDGFIWRKYGQKDIQNSKYPRLYFRCTYKydsGCRATRQVQQSEDDPSLYVITYFGEHTC 172
                      8***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-25107172IPR003657WRKY domain
PROSITE profilePS5081120.002107170IPR003657WRKY domain
SuperFamilySSF1182906.28E-24109172IPR003657WRKY domain
SMARTSM007741.6E-37112174IPR003657WRKY domain
PfamPF031065.5E-25113172IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MALATSTGPA FMVSELMAQG RESAAALEAL LQGASPPAHG GLQELAAQIL RCCDRALAAL  60
HGGGGGELSA SGCADRKRKS APGGVTTQAR PKRRARASGG ETPTRVEKKR TAEDGFIWRK  120
YGQKDIQNSK YPRLYFRCTY KYDSGCRATR QVQQSEDDPS LYVITYFGEH TCCGDAAAVE  180
DDGKTQPFVI NFGSATASSG SPWLSDDDDD DVRSETSHLS QAVCLPEEAD QPRAKMCKVE  240
SPPPAAEPSS SADASCASPV LEPGCLDWDY FGESSFDNDY FGESSFDDIV EFVNFDEFAL  300
FQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-24110172668OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000659G0050
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0989770.0FP098977.1 Phyllostachys edulis cDNA clone: bphyem114k07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177373.11e-120WRKY transcription factor 44-like
TrEMBLA0A0U2USI61e-119A0A0U2USI6_WHEAT; WRKY transcription factor 1
TrEMBLA0A452ZCR51e-119A0A452ZCR5_AEGTS; Uncharacterized protein
TrEMBLR7WCZ21e-119R7WCZ2_AEGTA; Putative WRKY transcription factor 70
STRINGEMT198781e-119(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46632667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.16e-26WRKY DNA-binding protein 70