PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000664G0320
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bZIP
Protein Properties Length: 117aa    MW: 13253.9 Da    PI: 9.1088
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000664G0320genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.97e-1659111355
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                      + +r++r++kNRe+A rsR+RK+a+i+eLe  v +Le+e  +L  elee +++
  PH01000664G0320  59 AMQRQKRMIKNRESAARSRERKQAYIAELEAQVTQLEEEHAQLLRELEEQNQK 111
                      689*****************************************888876655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR000415.7E-55672IPR001630cAMP response element binding (CREB) protein
SMARTSM003385.6E-857115IPR004827Basic-leucine zipper domain
PfamPF001702.4E-1459110IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.17459111IPR004827Basic-leucine zipper domain
CDDcd147076.96E-1561108No hitNo description
SuperFamilySSF579593.5E-1261110No hitNo description
Gene3DG3DSA:1.20.5.1701.6E-1462110No hitNo description
PROSITE patternPS0003606479IPR004827Basic-leucine zipper domain
PRINTSPR000415.7E-57494IPR001630cAMP response element binding (CREB) protein
PRINTSPR000415.7E-594111IPR001630cAMP response element binding (CREB) protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MTLEDFLARE DDTRVEGVEG KMVVGFPDRA EDAARGGRGS AGGGRGRKRA LVDQMDRAAM  60
QRQKRMIKNR ESAARSRERK QAYIAELEAQ VTQLEEEHAQ LLRELEEQNQ KRLKEI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13543GGRGSAGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269|PubMed:20039193, ECO:0000269|PubMed:23397192}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000664G0320
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by anoxia, drought, salt stress, oxidative stress, cold and abscisic acid (ABA) (PubMed:20039193). Induced by D-allose (PubMed:23397192). {ECO:0000269|PubMed:20039193, ECO:0000269|PubMed:23397192}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655359.24e-47PREDICTED: G-box-binding factor 4-like
RefseqXP_015639395.12e-46bZIP transcription factor 12-like
SwissprotQ0JHF16e-40BZP12_ORYSJ; bZIP transcription factor 12
TrEMBLA0A0D3G8413e-46A0A0D3G841_9ORYZ; Uncharacterized protein
TrEMBLQ84P613e-46Q84P61_ORYSJ; OSE2-like protein (Fragment)
STRINGOMERI05G14750.12e-46(Oryza meridionalis)
STRINGOB05G25740.16e-47(Oryza brachyantha)
STRINGORGLA05G0154900.11e-46(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26653786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03970.12e-21G-box binding factor 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]