PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000667G0020
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ARF
Protein Properties Length: 638aa    MW: 71474.8 Da    PI: 5.014
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000667G0020genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.92.9e-21116204184
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                      f+k+ltpsd++++g +++ +++a+e+      +++ + +++l+ +d++g +W++k+iyr++++r++lt+GW+ Fv +++L +gD +v  +
  PH01000667G0020 116 FCKILTPSDTSTHGGFSVLRRHANEClppldmSMP-TPTQELITKDLHGSEWRFKHIYRGQPRRHLLTSGWSTFVTSKKLIAGDAFVYLR 204
                      99****************************96444.45569999*****************************************99873 PP
2Auxin_resp70.45.7e-242042681883
       Auxin_resp  18 rastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      r s+s+++v+v+k+++a k+ ++vGmRfkm+fe+ed++ +++sGt+v   dl+p +W++S+W+sLk
  PH01000667G0020 204 RLSQSQYIVSVNKYLEASKIGFTVGMRFKMSFEGEDVPVKKFSGTIVVDGDLSP-HWSGSEWKSLK 268
                      789*************************************************99.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.1E-31107211IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.2E-32110211IPR015300DNA-binding pseudobarrel domain
CDDcd100177.22E-18114216No hitNo description
PROSITE profilePS5086310.912116218IPR003340B3 DNA binding domain
SMARTSM010195.2E-15116215IPR003340B3 DNA binding domain
PfamPF023622.3E-19116204IPR003340B3 DNA binding domain
PfamPF065077.6E-20204268IPR010525Auxin response factor
PfamPF023095.4E-5528570IPR033389AUX/IAA domain
SuperFamilySSF542772.35E-8532607No hitNo description
PROSITE profilePS5174522.127534622IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MAQARDPELL AELWRACAGP LVEVPQTDER VFYFLQGHLE QLQEPTDPAL LAEQIKMFQV  60
PYKILCKVVN VELKAETETD EVFAQITLQP DPDQNNLPTV PDPPLPELPR PVVHSFCKIL  120
TPSDTSTHGG FSVLRRHANE CLPPLDMSMP TPTQELITKD LHGSEWRFKH IYRGQPRRHL  180
LTSGWSTFVT SKKLIAGDAF VYLRLSQSQY IVSVNKYLEA SKIGFTVGMR FKMSFEGEDV  240
PVKKFSGTIV VDGDLSPHWS GSEWKSLKVQ WDEITNSNGP ERVSPWDIEP FDGSAPTINA  300
PLQSSMKNKR PREPSENLDL QSLEPTQEFW LSGMPQQHEK TGIGSSEPNC ISGQHVVWPS  360
ERPGYGTMSS SSVCQNPVVL ESWLKDFNSS SKGVSPTLSE ISQKLFQVTS NEARVAPWPA  420
LSVYQAEEPT SKLSCSTALC SYRTEEVAPN MSKAVEERKE PGVFRLFGVN LMKHTNNTAT  480
ADKMSVEAGE TSTRAAGSYE DSCQLSALSK VTKDHKVVKE NPREILSHQS YTARNRIKVQ  540
MHGNAMGRAV DLASLDGYEQ LMGELEEVFD IKDLKQKWKV AFTDDEGDTM EVGDDPWLEF  600
CQMVRKIVIY PIEDEKIEPH QKLLSAAAPE QDLKTEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-104929219356Auxin response factor 1
4ldy_B1e-104929219356Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000667G0020
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under light or dark conditions. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0713000.0AB071300.1 Oryza sativa OsARF16 mRNA for auxin response factor 16, partial cds.
GenBankAK0640070.0AK064007.1 Oryza sativa Japonica Group cDNA clone:001-124-G08, full insert sequence.
GenBankAK1025210.0AK102521.1 Oryza sativa Japonica Group cDNA clone:J033095P08, full insert sequence.
GenBankEU8470080.0EU847008.1 Oryza sativa Japonica Group clone KCS385B05 auxin response factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006645691.10.0PREDICTED: auxin response factor 1
SwissprotQ5NB850.0ARFA_ORYSJ; Auxin response factor 1
TrEMBLA0A0E0BZN60.0A0A0E0BZN6_9ORYZ; Auxin response factor
TrEMBLA0A0E0BZN80.0A0A0E0BZN8_9ORYZ; Auxin response factor
STRINGOMERI01G08660.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.11e-148auxin response factor 9
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]