PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000668G0290
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 924aa    MW: 103645 Da    PI: 6.3428
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000668G0290genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.96.4e-1079119345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++ eE+   +++ +q+G++ W++I  +++ g+t++++k++w 
  PH01000668G0290  79 KFSVEEEWMVIELQAQFGNK-WARIVTYLP-GKTDNDVKNFWS 119
                      7999****************.*********.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.30772126IPR017930Myb domain
SMARTSM007174.0E-976124IPR001005SANT/Myb domain
SuperFamilySSF466895.3E-978123IPR009057Homeodomain-like
CDDcd001672.37E-779118No hitNo description
Gene3DG3DSA:1.10.10.609.0E-1379121IPR009057Homeodomain-like
PfamPF002492.1E-879119IPR001005SANT/Myb domain
PfamPF142236.0E-25221356No hitNo description
PROSITE profilePS5007611.061524600IPR001623DnaJ domain
PRINTSPR006256.2E-10572592IPR001623DnaJ domain
SuperFamilySSF465654.45E-12575632IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1102.8E-14575628IPR001623DnaJ domain
PROSITE patternPS006360577596IPR018253DnaJ domain, conserved site
PRINTSPR006256.2E-10592611IPR001623DnaJ domain
PROSITE profilePS5118816.162643727IPR001305Heat shock protein DnaJ, cysteine-rich domain
SuperFamilySSF579386.02E-10662725IPR001305Heat shock protein DnaJ, cysteine-rich domain
PfamPF006841.3E-9662720IPR001305Heat shock protein DnaJ, cysteine-rich domain
Gene3DG3DSA:2.10.230.102.1E-11662720IPR001305Heat shock protein DnaJ, cysteine-rich domain
CDDcd107191.41E-13663718No hitNo description
PfamPF015561.5E-29686851IPR002939Chaperone DnaJ, C-terminal
SuperFamilySSF494931.44E-6699776IPR008971HSP40/DnaJ peptide-binding
Gene3DG3DSA:2.60.260.205.1E-13723768No hitNo description
CDDcd107471.43E-37723853No hitNo description
SuperFamilySSF494931.44E-17772853IPR008971HSP40/DnaJ peptide-binding
Gene3DG3DSA:2.60.260.201.6E-26772852No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006457Biological Processprotein folding
GO:0003677Molecular FunctionDNA binding
GO:0031072Molecular Functionheat shock protein binding
GO:0051082Molecular Functionunfolded protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 924 aa     Download sequence    Send to blast
MAEEDEVTGA PFDPKASCRA PASPAASDGS TSSCQTSRPK TPKMTAAQSD LMLEGLQPFS  60
RPLQELSYLS LVKIFDGCKF SVEEEWMVIE LQAQFGNKWA RIVTYLPGKT DNDVKNFWST  120
RQKRLARLLR TPLPSQSNKN SNNANALACS LESRPTTGPL LDQVPFGGNS SVDLCCATAP  180
FMEYQDAARI PHDQTGSGFL GFEGPLPLQD AVEEDDVERC QDKKALAAIY HDVSEETLLA  240
LNGKRTAKEA WTTLKSMYVG VERMTRAKLQ TTKKEFDNLH MRKGESIDEF AMRVTLALSK  300
MRTLGERVED SCVVDKVLRV LTPKFLPIVC TLENLEDLDV MSDEEVFGRL KAFEERHMVT  360
EEEGEHLLLT RAQWESRAKT KEGGSGSGKN RKFDKAKHPY PLLDFPGLPE RCDIDPGFVD  420
AGAMDDLDYQ ELLSVVQPAP MVLPFFGMEC PHDAVKAEPP YSPDDFFNDL PPDMYLRPAG  480
HSLVPSPPVF HRPRDIPKLI HHPMASTNGP DYLSIRASTP TGNDRAGVYK APRPQTLQTL  540
GRVVRAVTTD TARLRPPRRR PRFCRFRNSN NTKYYEFKEL SQAYEVLSDP EKRDIYDQYG  600
EDALREGMGG GGDCHNPFDI FEQFFGGGAF GESYIDQINY GGKKRNSWNI IIKGKLNGMS  660
LKGSKSGAPG TCYGCHGVGM KTITRHIGLG MIQQMNTVCP ECRGSGEIIC DGDKCPNCTT  720
SKVVQEKKVL EVHIEKGMQH AQKIVFQGEA DEAPDTVTRD IVFILQVKGH PRFKRKYEDL  780
FIEHTISLTE ALCGFQFILT HLDSRQLLIK SNPGEVIKPG QHKAINDEGM PHHGRPFMKG  840
RLFVEFNVEF PESGALSPDQ CRALEKIIPQ RLGSQWSNMQ VYQCEETIMH DVNIEEEMRR  900
RQYQRRQEAY EEDAGTRVQC AQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1nlt_A5e-4366286547248Mitochondrial protein import protein MAS5
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000668G0290
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.15e-24MYB family protein