PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000673G0600
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 402aa    MW: 44891.5 Da    PI: 6.765
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000673G0600genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2201.8e-06149172123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      y+C  Cg++F+++ +L rH r  H
  PH01000673G0600 149 YSCAVCGRRFPTRPELARHFRQlH 172
                      99*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.13E-5148175No hitNo description
Gene3DG3DSA:3.30.160.608.1E-4148175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.11149177IPR007087Zinc finger, C2H2
SMARTSM003553.9E-4149172IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280151172IPR007087Zinc finger, C2H2
CDDcd061673.57E-9178299No hitNo description
Gene3DG3DSA:3.40.50.10106.0E-4224288IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MPPPLSFRHL PSSPPPLHHR AHHLHHRLSL RTDPPQRHAA AAAAENPYAA PLPADVEMVR  60
GRDGVWTAGS PTVVVLWDLD NKPPRGPPFP AATSLREAAS LLGRVVSVSA FANRHAFSHL  120
PAWVAAERRD RRALDRAERA GVVAPPFPYS CAVCGRRFPT RPELARHFRQ LHQRERNKKL  180
ARLRSLKGKK RQKFRERFIS SNTKYEEAAR ELLTPKVGYG LASELRRAGV HVRTVSDKPQ  240
AADHALKRQV KHSVACGVDW VMLISDDSDF TDTVHKARAA DLRTVVVGDG CRALGNVADI  300
WLPWDHVENG EVDEEMLRSG MRPEFGDEEE DEQDEEFIVD WDTSELDDVV DDIVATRTKL  360
FGATTMSAFA DKDIVDGVLG LGLNRDNMFW SSDDEDEDGY L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000673G0600
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0923400.0FP092340.1 Phyllostachys edulis cDNA clone: bphylf048b18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173465.10.0uncharacterized protein LOC109759006
RefseqXP_020173471.10.0uncharacterized protein LOC109759006
TrEMBLA0A453QU350.0A0A453QU35_AEGTS; Uncharacterized protein
STRINGORUFI06G04410.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98063234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-114C2H2-like zinc finger protein