PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000679G0010

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bZIP

Protein Properties

Length: 343aa MW: 38322.8 Da PI: 9.5016

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000679G0010	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.4	1e-10	54	92	5	43
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 ++ rr+++NReAAr+sR+RKka+i++Le+ +L + + PH01000679G0010 54 RVLRRLAQNREAARKSRLRKKAYIQQLETSRMKLAQLEQ 92 5789************************85555544433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.4E-5	50	110	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.4E-8	52	99	No hit	No description
PROSITE profile	PS50217	9.128	52	96	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.6E-7	54	93	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.41E-7	54	95	No hit	No description
PROSITE pattern	PS00036	0	57	72	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	9.9E-28	141	215	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009409	Biological Process	response to cold
GO:0042742	Biological Process	defense response to bacterium
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MTSASTQFAA PDRMGMYDRP RPLGMWNNEA FKVASSQATS GSTIMEADTK FDTRVLRRLA 60 QNREAARKSR LRKKAYIQQL ETSRMKLAQL EQELERARQQ GVYVSGGLRD SPLGLAVSID 120 PGVAAFEIEY NNWVDEQDRH TGELRAALQG QTTELELRML VETGLSNYDN LFGIKAIAAN 180 SDVLYIMSGM WKTPAERFFL WIGGFRPSEV LKILSPQLDP LTDQQVAAVC DLQQTSRQFE 240 DALSQGIEKL QQTLAEALVA TDPFGSSDMV QMANAVEKLK ALAKFVDQAD QLRRTTLKQM 300 HKILTTRQAA RGLLALGDYF QRLRALSSLW AARPREPAVS KM*

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MTSASTQFAA PDRMGMYDRP RPLGMWNNEA FKVASSQATS GSTIMEADTK FDTRVLRRLA  60
QNREAARKSR LRKKAYIQQL ETSRMKLAQL EQELERARQQ GVYVSGGLRD SPLGLAVSID  120
PGVAAFEIEY NNWVDEQDRH TGELRAALQG QTTELELRML VETGLSNYDN LFGIKAIAAN  180
SDVLYIMSGM WKTPAERFFL WIGGFRPSEV LKILSPQLDP LTDQQVAAVC DLQQTSRQFE  240
DALSQGIEKL QQTLAEALVA TDPFGSSDMV QMANAVEKLK ALAKFVDQAD QLRRTTLKQM  300
HKILTTRQAA RGLLALGDYF QRLRALSSLW AARPREPAVS KM*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00502	DAP	Transfer from AT5G10030	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000679G0010

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823704.1	1e-176	transcription factor TGAL6-like isoform X2
Refseq	XP_025823705.1	1e-176	transcription factor TGAL6-like isoform X2
Swissprot	A0A0P0WFC8	1e-174	TGAL6_ORYSJ; Transcription factor TGAL6
TrEMBL	A0A0A9D9I6	0.0	A0A0A9D9I6_ARUDO; Uncharacterized protein
STRING	Pavir.Gb00388.1.p	1e-178	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3571	38	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	1e-129	TGACG motif-binding factor 4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Okada A, et al. OsTGAP1, a bZIP transcription factor, coordinately regulates the inductive production of diterpenoid phytoalexins in rice. J. Biol. Chem., 2009. 284(39): p. 26510-8 [PMID:19635799] Okada K The biosynthesis of isoprenoids and the mechanisms regulating it in plants. Biosci. Biotechnol. Biochem., 2011. 75(7): p. 1219-25 [PMID:21737944] Yamane H Biosynthesis of phytoalexins and regulatory mechanisms of it in rice. Biosci. Biotechnol. Biochem., 2013. 77(6): p. 1141-8 [PMID:23748776] Miyamoto K, et al. Identification of target genes of the bZIP transcription factor OsTGAP1, whose overexpression causes elicitor-induced hyperaccumulation of diterpenoid phytoalexins in rice cells. PLoS ONE, 2014. 9(8): p. e105823 [PMID:25157897] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]