PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000682G0190
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bZIP
Protein Properties Length: 199aa    MW: 22466.2 Da    PI: 8.7157
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000682G0190genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.61.1e-1292150361
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                      e +r rr+ +NRe+ArrsR RK++++ +L   v  L   N++L ++l++    ++++  
  PH01000682G0190  92 EERRKRRMVSNRESARRSRMRKQKQMSQLWAQVVHLRDTNRDLLDRLNRAIRDCDRVLR 150
                      56899******************************************998888877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.6E-1090154IPR004827Basic-leucine zipper domain
PfamPF001701.9E-1092147IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.97992155IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.41E-1094142No hitNo description
Gene3DG3DSA:1.20.5.1702.9E-894166No hitNo description
CDDcd147022.46E-1495146No hitNo description
PROSITE patternPS00036097112IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MYPGEVASVV LPYLLPAART ASFGPHYHIA ADDHLLFQYS SSNLVLPYSA AHCLQHGGEP  60
FLDRAGPPVV RNVSNSDESA DGDRQRRLQL AEERRKRRMV SNRESARRSR MRKQKQMSQL  120
WAQVVHLRDT NRDLLDRLNR AIRDCDRVLR ESSRLRDERA ELQRRLEELP VVDDGAVSVA  180
VDVAGDGDDQ PARMVATN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193114RRKRRMVSNRESARRSRMRKQK
2106113RRSRMRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00647PBMTransfer from LOC_Os02g49560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000682G0190
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454348.12e-58basic leucine zipper 43
TrEMBLA0A287W9199e-61A0A287W919_HORVV; Uncharacterized protein
STRINGPavir.Aa00472.1.p4e-58(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118635126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13600.12e-08basic leucine-zipper 58