PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000692G0440
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NF-YA
Protein Properties Length: 235aa    MW: 24902.7 Da    PI: 10.1345
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000692G0440genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA40.77.6e-13831063558
        CBFB_NFYA  35 rkpylheSRhkhAlrRpRgsgGrF 58 
                        pylheSRh hA++R RgsgGrF
  PH01000692G0440  83 TVPYLHESRHLHAMKRVRGSGGRF 106
                      579********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.1E-435109IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.1E-1084106IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115215.30285109IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MTEIIGSSSL LSIIATVLVK IQLTSDSLGK TVDDHMRSTL TFNNKQSVFA SQNIDYGQPI  60
ACISYPYNDS GSGGIWAAYG SNTVPYLHES RHLHAMKRVR GSGGRFLNTK QQQQLRTAST  120
KATTDGANSS GSIHLRLGGG AAGDRTTSVS ETMASQENSK RVAASAPAFT VAPRMVHKNG  180
AFFQHHGQHL SFSSHFSQAG TQGGVGGAMH NGTSRGFPLC NDQRLRTVAG DLDF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000692G0440
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021314352.13e-60nuclear transcription factor Y subunit A-5 isoform X4
TrEMBLQ6YZ662e-71Q6YZ66_ORYSJ; Uncharacterized protein OSJNBb0013K01.26
STRINGSb04g034760.13e-61(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132762833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.11e-12nuclear factor Y, subunit A6