PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000700G0690

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

HSF

Protein Properties

Length: 386aa MW: 41996.9 Da PI: 9.0706

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000700G0690	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	92.6	4.5e-29	19	146	2	103
HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT.................... CS HSF_DNA-bind 2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks.................... 74 Fl+k y++++d+++++++sw ++ +sfvv+ + efa++vLp+yFkh+nf+SFvRQLn+Y + + + PH01000700G0690 19 FLTKAYQLVDDPATDHVVSWGdDRASSFVVWRPPEFARDVLPSYFKHNNFSSFVRQLNTYVRICARAPLHL--Pvvyvgvcdlvcaerlqcniv 110 9******************7778*******************************87777777665..24599999999999888 PP .....X..TTSEEEEESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 75 .....k..ekiweFkhksFkkgkkellekikrkkse 103 k ++ weF+++ F+kg+k+ll++i+r+ks+ PH01000700G0690 111 mqgfrKvvPERWEFANEFFRKGEKQLLHEIHRRKSA 146 776651669**********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	6.7E-32	10	78	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.8E-39	15	143	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	8.89E-26	16	143	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	4.0E-13	19	42	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	3.7E-26	19	143	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.0E-13	58	70	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.0E-13	71	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	6.7E-32	113	137	IPR011991	Winged helix-turn-helix DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008356	Biological Process	asymmetric cell division
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MEWESDVAAG QKASVPAPFL TKAYQLVDDP ATDHVVSWGD DRASSFVVWR PPEFARDVLP 60 SYFKHNNFSS FVRQLNTYVR ICARAPLHLP VVYVGVCDLV CAERLQCNIV MQGFRKVVPE 120 RWEFANEFFR KGEKQLLHEI HRRKSAAAAG PPFLPPFFGL FRPDDGMVLH GLGALAPQRH 180 WLEAAGGPVA TSRLLALGPT TTTAEALMEE NERLRRGNAA LLQELAHMRK LYSDIIYFVQ 240 NHVRPVAPSP AAAAVLHGLG MSSKQALAAE ARNASGRSAT SSSSLTVAED QPSLALLPRT 300 EKIGTEAAGT SSSSRTRAGR PGPTKLFGVD LSTDQTCGAS RKRSLQEQPP TSPDWKRSMV 360 LACDDLRLSV VPPPQPCAVS SPARI*

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MEWESDVAAG QKASVPAPFL TKAYQLVDDP ATDHVVSWGD DRASSFVVWR PPEFARDVLP  60
SYFKHNNFSS FVRQLNTYVR ICARAPLHLP VVYVGVCDLV CAERLQCNIV MQGFRKVVPE  120
RWEFANEFFR KGEKQLLHEI HRRKSAAAAG PPFLPPFFGL FRPDDGMVLH GLGALAPQRH  180
WLEAAGGPVA TSRLLALGPT TTTAEALMEE NERLRRGNAA LLQELAHMRK LYSDIIYFVQ  240
NHVRPVAPSP AAAAVLHGLG MSSKQALAAE ARNASGRSAT SSSSLTVAED QPSLALLPRT  300
EKIGTEAAGT SSSSRTRAGR PGPTKLFGVD LSTDQTCGAS RKRSLQEQPP TSPDWKRSMV  360
LACDDLRLSV VPPPQPCAVS SPARI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hdg_A	4e-17	15	143	7	110	Heat shock factor protein 1
5hdn_A	4e-17	15	143	7	110	Heat shock factor protein 1
5hdn_B	4e-17	15	143	7	110	Heat shock factor protein 1
5hdn_C	4e-17	15	143	7	110	Heat shock factor protein 1
5hdn_D	4e-17	15	143	7	110	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00187	DAP	Transfer from AT1G46264	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000700G0690

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004693	3e-62	AP004693.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0461F06.
GenBank	AP014964	3e-62	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015649314.1	1e-110	putative heat stress transcription factor B-4a
Swissprot	Q6Z9R8	1e-111	HFB4A_ORYSJ; Putative heat stress transcription factor B-4a
TrEMBL	A0A0E0LVT2	1e-123	A0A0E0LVT2_ORYPU; Uncharacterized protein
STRING	OPUNC08G15560.1	1e-124	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	7e-69	heat shock transcription factor B4