PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000701G0030
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HSF
Protein Properties Length: 297aa    MW: 32239.6 Da    PI: 8.6325
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000701G0030genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind101.29.2e-32721642103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      F+ k++++++d++++ +++w   +n+f+vld+  f++ +Lp+yFkh+nfaSFvRQLn+YgF+kv+ ++         weF+h+sF +++ +ll 
  PH01000701G0030  72 FVAKTFHMVSDPATDAIVRWGGASNTFLVLDTAAFSDFLLPSYFKHRNFASFVRQLNTYGFRKVDPDR---------WEFAHESFLREQAQLLP 156
                      9********************999*****************************************999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                       i rkk++
  PH01000701G0030 157 LIVRKKKK 164
                      *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.9E-3466155IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-4668161IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.07E-3069161IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-167295IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.7E-2772161IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-16110122IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340111135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-16123135IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEVSSADEDI LTREPHTLIP PPSHLSPNRD AMTRPRDSAT LYACGATRGP ECKGHQFQAG  60
GGGGDQGAIA PFVAKTFHMV SDPATDAIVR WGGASNTFLV LDTAAFSDFL LPSYFKHRNF  120
ASFVRQLNTY GFRKVDPDRW EFAHESFLRE QAQLLPLIVR KKKKAGAAVR ELCEEGAEVR  180
GTIQAVQKLR DEQRGMDQDL QAMDRRLRAA ENRPGQMMAF LAKLADEPGV VLRAMFAKKE  240
ELAAAGNGSS TPGKRRRIGA EAGRGDCGAM AGADVAELAQ SRAAPFPFSV LGQVFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-245416111129Heat shock factor protein 1
5d5v_B5e-245416111129Heat shock factor protein 1
5d5v_D5e-245416111129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253257KRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000701G0030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0663160.0AK066316.1 Oryza sativa Japonica Group cDNA clone:J013066G03, full insert sequence.
GenBankAY3444930.0AY344493.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633152.11e-140heat stress transcription factor C-1b
SwissprotQ942D61e-141HFC1B_ORYSJ; Heat stress transcription factor C-1b
TrEMBLA0A0E0JNN01e-140A0A0E0JNN0_ORYPU; Uncharacterized protein
STRINGOPUNC01G29770.11e-141(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112983141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.18e-56heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Schmidt R, et al.
    Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica.
    AoB Plants, 2012. 2012: p. pls011
    [PMID:22616023]