PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000705G0580
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family E2F/DP
Protein Properties Length: 348aa    MW: 36983 Da    PI: 9.4766
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000705G0580genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP67.12.3e-21124185271
          E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      ++++Lr++++k   ++ek+e+ g++t+ne  ++    d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  PH01000705G0580 124 SGRGLRQFSMK---VCEKVESkGRTTYNE--QQY---DEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 185
                      689********...*****999******9..566...8899********************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.3E-10119149IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.6E-25123185IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023194.7E-19125185IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.99E-16126186IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.3E-22150190IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144584.97E-35190284IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440743.66E-34192314No hitNo description
SMARTSM011385.5E-70192345IPR014889Transcription factor DP, C-terminal
PfamPF087812.0E-32193318IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MVSGVAHRPD GDGGRGASSF PRPPQPAGAR SSLGTPPPSG GAQSASSSGG SAGSPSSRCE  60
QHGPAATGKG AAPAAAAAAS TPASESTFVR LNNLDIHGDD APSSQAPASK KKKRGPRAAG  120
PDKSGRGLRQ FSMKVCEKVE SKGRTTYNEQ QYDEKNIRRR VYDALNVLMA MDIISKDKKE  180
IQWKGLPRTS INDIEELQTE LVGLKGRVEK KSAYLQELQD QRNEHLYGSG NTPSGGVALP  240
FILVQTRPHA TVEVEISEDM QLVHFDFNST PFELHDDSYV LKAMSSGGKE QNDGTQEPSS  300
NGGESSSMPN IYRHQVQQPA RANNGTTRLP SSPPIPGILK GRVKHEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B7e-26117190193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000705G0580
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628001.10.0transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-117DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A0E0CVB00.0A0A0E0CVB0_9ORYZ; Uncharacterized protein
STRINGOMERI03G03770.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-109Transcription factor DP