PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000716G0820
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 413aa    MW: 44251.9 Da    PI: 7.0244
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000716G0820genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.21.6e-28173229259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +DgynWrKYGqK+ k++e prsYY+Ct  gCpvkk vers  d+ + eitY+g+H h+
  PH01000716G0820 173 KDGYNWRKYGQKQLKDAESPRSYYKCTRDGCPVKKIVERSF-DGCIKEITYKGRHSHP 229
                      8****************************************.***************8 PP
2WRKY98.54.4e-31308366159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +dDgy+WrKYGqK+vkg++ prsYY+Ct  +C+v+k++ers+ dpk+v +tY+g+H h+
  PH01000716G0820 308 VDDGYRWRKYGQKVVKGNHRPRSYYKCTADKCNVRKQIERSSADPKCVLTTYTGRHSHD 366
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.355167231IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-25169231IPR003657WRKY domain
SuperFamilySSF1182905.75E-23171231IPR003657WRKY domain
SMARTSM007744.3E-30172230IPR003657WRKY domain
PfamPF031061.3E-21173229IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.4E-32293368IPR003657WRKY domain
SuperFamilySSF1182907.59E-27301368IPR003657WRKY domain
PROSITE profilePS5081132.971303368IPR003657WRKY domain
SMARTSM007747.2E-33308367IPR003657WRKY domain
PfamPF031061.2E-22309366IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MADRRGDAMR QQPFASAQER AFDGGGSSGP GPAFGGGFDH GSYMALLGAG AGVSVNPQPP  60
PPPWAVEEVR AASAINLTPQ FSMVNYAQPS YQQPASLVSP LAASANLQPY PSYLHADPPP  120
QWPPRATSSS SLPPHTFAVL PTAPPHEQHM QLLRAAALGG SQAAPVAIEQ PAKDGYNWRK  180
YGQKQLKDAE SPRSYYKCTR DGCPVKKIVE RSFDGCIKEI TYKGRHSHPR PHEPRRGHGA  240
GAMCGGDDAV AAGGASAEAD EDEPSDEDTL HEDDGEEGHD RDAGGEVGQR VVKKPKIIIQ  300
TPSEVDLVDD GYRWRKYGQK VVKGNHRPRS YYKCTADKCN VRKQIERSSA DPKCVLTTYT  360
GRHSHDPPGR GADAAAAGSS SANLMTPSTM NSAGGMFQQS SDTRRLKEED QD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-29174368877Probable WRKY transcription factor 4
2lex_A1e-29174368877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000716G0820
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3638032e-88AK363803.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2019A07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197516.11e-154probable WRKY transcription factor 58
SwissprotQ6B6R49e-65WRK24_ORYSI; WRKY transcription factor WRKY24
SwissprotQ9ZQ706e-65WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A446UMZ81e-153A0A446UMZ8_TRITD; Uncharacterized protein
STRINGGRMZM2G008029_P011e-147(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28753236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-33WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]