PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000718G0100
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 227aa    MW: 24908 Da    PI: 8.9273
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000718G0100genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox598e-1960113356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k++++++eq + Le  F+k+r++ + ++ +LA++lgL+ +qV vWFqNrRa++k
  PH01000718G0100  60 KKRRLSDEQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHK 113
                      56689***********************************************99 PP
2HD-ZIP_I/II110.61.1e-3560151293
      HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      kkrrls+eq+++LE+sF++e+kLe+ rKv+la eLgl+++qvavWFqnrRAR+k+k + +++++L++a+d+++ +n++Le+e  +L+++l+e
  PH01000718G0100  60 KKRRLSDEQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMGEEFAKLRAAHDTVVLQNCHLETELLKLKDRLAE 151
                      9**************************************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.07E-1654114IPR009057Homeodomain-like
PROSITE profilePS5007116.77955115IPR001356Homeobox domain
SMARTSM003891.2E-1658119IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.7E-1760113IPR009057Homeodomain-like
PfamPF000462.5E-1660113IPR001356Homeobox domain
CDDcd000863.96E-1660115No hitNo description
PRINTSPR000314.9E-68695IPR000047Helix-turn-helix motif
PROSITE patternPS00027090113IPR017970Homeobox, conserved site
PRINTSPR000314.9E-695111IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MSGEEGEKLL FPSFVFPESF PEAATSGSGS GGEQKKARQR RRRRARPAAA GESGGDDQAK  60
KRRLSDEQAR FLEMSFKKER KLETPRKVQL AAELGLDAKQ VAVWFQNRRA RHKSKLMGEE  120
FAKLRAAHDT VVLQNCHLET ELLKLKDRLA EAEEEKSKLM ATATGGGGVS SPSSSSFSTV  180
THQPALVGQF GVEEADLTYM SDYAYNNYMM DLAAGGYLGG VYDQFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14162RRRARPAAAGESGGDDQAKKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000718G0100
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5540341e-137AY554034.1 Oryza sativa (indica cultivar-group) clone OG05G01 Hox12 (hox12) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649569.11e-105PREDICTED: homeobox-leucine zipper protein HOX12
SwissprotQ10QF21e-105HOX12_ORYSJ; Homeobox-leucine zipper protein HOX12
TrEMBLA0A0D9VQT11e-107A0A0D9VQT1_9ORYZ; Uncharacterized protein
STRINGLPERR03G06520.11e-107(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP200638101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18550.11e-35homeobox protein 21
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Gao S,Fang J,Xu F,Wang W,Chu C
    Rice HOX12 Regulates Panicle Exsertion by Directly Modulating the Expression of ELONGATED UPPERMOST INTERNODE1.
    Plant Cell, 2016. 28(3): p. 680-95
    [PMID:26977084]