PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000718G0250

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

HD-ZIP

Protein Properties

Length: 229aa MW: 25612.8 Da PI: 8.9178

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000718G0250	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.3	2.7e-18	61	115	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k+++++++q + Le F+k+r++ + ++ +LA++lgL+ +qV vWFqNrRa++k+ PH01000718G0250 61 KKRRLSDKQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKN 115 56689************************************************95 PP
2	HD-ZIP_I/II	110.7	9.8e-36	61	152	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkrrls++q+++LE+sF++e+kLe+ rKv+la eLgl+++qvavWFqnrRAR+k+k +E+++++L++a+da++ +n++Le+e +L+++l+e PH01000718G0250 61 KKRRLSDKQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKNKLMEEEFAKLRAAHDAVVLQNCHLETELLKLKDRLAE 152 9**************************************************************************************99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.714	56	116	IPR001356	Homeobox domain
SMART	SM00389	5.8E-16	59	120	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.23E-16	60	122	IPR009057	Homeodomain-like
CDD	cd00086	1.23E-15	61	116	No hit	No description
Pfam	PF00046	7.9E-16	61	115	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.6E-17	61	115	IPR009057	Homeodomain-like
PRINTS	PR00031	5.0E-6	87	96	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	91	114	IPR017970	Homeobox, conserved site
PRINTS	PR00031	5.0E-6	96	112	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MSREEGEKLL FPSFAFPESF PEAATSRSGS AGGEQKKARQ RRRRKARPAA EGESGGDDQA 60 KKRRLSDKQA RFLEMSFKKE RKLETPRKVQ LAAELGLDAK QVAVWFQNRR ARHKNKLMEE 120 EFAKLRAAHD AVVLQNCHLE TELLKLKDRL AEVEEEKSKL MVTAAETATG VSSPSSSSFS 180 TVTHHPALVG QFGVEEEADL TYMSDYAYNN YMMDLAAGGY LGVYDQFN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	42	63	RRKARPAAEGESGGDDQAKKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000718G0250

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK073446	1e-139	AK073446.1 Oryza sativa Japonica Group cDNA clone:J033043C24, full insert sequence.
GenBank	AY554034	1e-139	AY554034.1 Oryza sativa (indica cultivar-group) clone OG05G01 Hox12 (hox12) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006649569.1	1e-106	PREDICTED: homeobox-leucine zipper protein HOX12
Swissprot	Q10QF2	1e-105	HOX12_ORYSJ; Homeobox-leucine zipper protein HOX12
TrEMBL	A0A0D9VQT1	1e-108	A0A0D9VQT1_9ORYZ; Uncharacterized protein
STRING	LPERR03G06520.1	1e-108	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2006	38	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	5e-36	homeobox protein 40

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Gao S,Fang J,Xu F,Wang W,Chu C Rice HOX12 Regulates Panicle Exsertion by Directly Modulating the Expression of ELONGATED UPPERMOST INTERNODE1. Plant Cell, 2016. 28(3): p. 680-95 [PMID:26977084]