PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000718G0500
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 172aa    MW: 18195.9 Da    PI: 11.0706
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000718G0500genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.13.5e-064567123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++C+k F r  nL+ H r H
  PH01000718G0500 45 FVCEICNKGFQRDQNLQLHRRGH 67
                     89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.02E-54368No hitNo description
Gene3DG3DSA:3.30.160.604.0E-64467IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121712.0E-54567IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9494567IPR007087Zinc finger, C2H2
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MSSSGRGAPP PAPPAKKKRA LPGMPDPDAE VIALSPKTLM ATNRFVCEIC NKGFQRDQNL  60
QLHRRGHNLP WKLRQRSGKE ARKRVRDSFI THRAFCDALA EESAKARAAP PPPEENGSSA  120
AAGPPPPQAP IPAAPAPLQQ PPPPPAPAPA PQQDKHGNGQ PNSIRLLAAL I*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000718G0500
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3759901e-102AK375990.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3111P12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022132500.13e-46protein indeterminate-domain 2-like
SwissprotQ9LVQ72e-43IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A2N9J1I18e-46A0A2N9J1I1_FAGSY; Uncharacterized protein
TrEMBLA0A438EWE79e-46A0A438EWE7_VITVI; Protein indeterminate-domain 11
STRINGMigut.L00295.1.p7e-47(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2461645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.16e-41C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]