PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000721G0360
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 435aa    MW: 48673.9 Da    PI: 9.9141
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000721G0360genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.38.4e-094680339
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39
                      W+++E  ++++a +++G++ Wk++++ +g g+++ +
  PH01000721G0360 46 QWSKDELMRFYEAYRRYGKN-WKKVSAAVG-GKSADM 80
                     6*****************99.*********.*99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.5084299IPR017884SANT domain
SuperFamilySSF466891.05E-94590IPR009057Homeodomain-like
PfamPF002492.7E-74681IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-44681IPR009057Homeodomain-like
CDDcd001672.40E-54781No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MGPAKGSRTI TKITIKGYED RQHHEDPTSS SKVKLKKRKM SDLGPQWSKD ELMRFYEAYR  60
RYGKNWKKVS AAVGGKSADM VEVLYSVHRT FLSLPESEGT PMGFIALVTG HHNVVDEFPS  120
HKESDQTVRT SGKTQNRGEA AQPKENEAPH PHHSYHGRRI SGFSSSFRKR YYGGKYCMAN  180
MLSPSFFPSL SLDKSYSVGF IVLITVYFSE LVRNIRSHPV GRRTPRVPVI FPEDINATDD  240
ATPEIKNTVS TTEKAVKEIN NDGTMFATNG CSPDGSSGIT EATKVVQGQT SMATKGTGDT  300
EMIHTQRHLK KRIIEQSMDE GQTSKVEHKT TTVAREENNF ADYQRFSEIF SPDEMLVLDV  360
LESLVTVPSK VSQPKIPSGT LGKKKSALSH RREEGPSPVD QYNKQGKQVS ECSASKARKK  420
RRKKLLDEEV RYCE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1417423RKKRRKK
2417424RKKRRKKL
3418422KKRRK
4418423KKRRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000721G0360
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230576.11e-175protein ALWAYS EARLY 3 isoform X1
RefseqXP_010230577.11e-175protein ALWAYS EARLY 3 isoform X1
TrEMBLA0A0Q3QNV11e-174A0A0Q3QNV1_BRADI; Uncharacterized protein
STRINGORUFI01G06570.21e-172(Oryza rufipogon)
STRINGOPUNC01G05810.21e-173(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86963038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.21e-27DNA binding