PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000722G0060

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

GeBP

Protein Properties

Length: 219aa MW: 23371.6 Da PI: 7.0773

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000722G0060	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	49	1.7e-15	21	108	3	96
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 +q+lw++ De++lL G f+a++g+ p d+ a++e +++s+s++ + + K++rLK Kf + + +h++ + +l+ + PH01000722G0060 21 VQKLWTDADEVALLTGAAAFRARHGAAPRLpDMGALFESLRGSLSMHLDQAKVYYKLKRLKSKFLHSAPA-------ATGGPHERRVRDLCADL 107 79**********************98877*******************************998877.......44556666666666666 PP DUF573 96 W 96 W PH01000722G0060 108 W 108 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.0E-15	22	109	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MAIAAPASFS AGGGGGGQGA VQKLWTDADE VALLTGAAAF RARHGAAPRL PDMGALFESL 60 RGSLSMHLDQ AKVYYKLKRL KSKFLHSAPA ATGGPHERRV RDLCADLWGA ELAPPVEADA 120 YAEEGDADEG YIGGDVEVAV RLPVVSEVLD EYWRRNARAL SGVSLEKGLA LLRAEEGRVA 180 ETKWRRQLGA EMRTQVRRHD LAKEVYGLLI DAVKGLGP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000722G0060

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003564112.1	7e-95	STOREKEEPER protein
TrEMBL	I1GZW5	2e-93	I1GZW5_BRADI; Uncharacterized protein
STRING	BRADI1G46160.1	3e-94	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2682	27	63