PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000722G0440
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 201aa    MW: 21505.2 Da    PI: 8.7468
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000722G0440genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.44.5e-0793115224
                      -S---SGGGGTS--TTTTT-SS- CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFa 24 
                      kt+ C  +     Ck+Gd+C+Fa
  PH01000722G0440  93 KTRMCTKYNTAKGCKFGDKCHFA 115
                      9*********************8 PP
2zf-CCCH18.73.2e-06173196125
                      --S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                      ykt+lC +f + GtC +G+r  FaH
  PH01000722G0440 173 YKTKLCENFVK-GTCTFGERYYFAH 196
                      9**********.*******955555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.3242553IPR000571Zinc finger, CCCH-type
SMARTSM003562.62552IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-72650IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-62650IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.03791119IPR000571Zinc finger, CCCH-type
SMARTSM003564.691118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-892115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-592117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5171200IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-9171200IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.868172199IPR000571Zinc finger, CCCH-type
SMARTSM003560.042172198IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MEFEDTPIQA TRRNMRAHET ESGQSSKSKP CTKFFSTDGC PFGEGCHFLH FVPGGYQAVA  60
KTLNLRNPAV SAPARAPVDH AAVANSHPAS TGKTRMCTKY NTAKGCKFGD KCHFAQDPNL  120
KNIELEGNFD QIKQASNMVS ELIATISASA PAKHPAGAAA PADRGGPGGR AKYKTKLCEN  180
FVKGTCTFGE RYYFAHGESE *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000722G0440
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0950841e-120FP095084.1 Phyllostachys edulis cDNA clone: bphylf032i18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960205.13e-55zinc finger CCCH domain-containing protein 31
SwissprotQ7XPK17e-47C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31
TrEMBLK3Z8B58e-54K3Z8B5_SETIT; Uncharacterized protein
STRINGPavir.Gb00110.1.p1e-54(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-39C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]