PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000726G0780
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 191aa    MW: 21261.7 Da    PI: 10.2138
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000726G0780genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.43.9e-14556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     ++rWT+eE+  l+ +v+++G+g W+tI r          R+  ++k++w+++
  PH01000726G0780  5 KQRWTPEEEAALKAGVAKHGPGKWRTILRDSEfsallRLRSNVDLKDKWRNL 56
                     79***********************************99***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.372161IPR017930Myb domain
SuperFamilySSF466891.72E-15259IPR009057Homeodomain-like
SMARTSM007173.2E-8459IPR001005SANT/Myb domain
PfamPF002493.7E-10556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-14556IPR009057Homeodomain-like
CDDcd116603.35E-19656No hitNo description
SuperFamilySSF467855.28E-6121159IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.6E-6122154IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MGAPKQRWTP EEEAALKAGV AKHGPGKWRT ILRDSEFSAL LRLRSNVDLK DKWRNLSVTA  60
GGYGSREKAR MALKKGRRVP KVIAQPMDLD TNNLDDVHNT VIDAKPLAMA VEPMQLESSP  120
DKSVARLDDL ILEAIKKLKE SSGSNKTAIA AYIEVFVTII TRNILFYFLT DIICCSAVHQ  180
FRLGRSTISI I
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000726G0780
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0982500.0FP098250.1 Phyllostachys edulis cDNA clone: bphylf051m05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160049.12e-91single myb histone 2-like
SwissprotB4FT406e-87SMH2_MAIZE; Single myb histone 2
TrEMBLA0A0A9F8047e-95A0A0A9F804_ARUDO; Uncharacterized protein
STRINGPavir.Ea02064.1.p3e-91(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.36e-52telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]