PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000735G0590
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family TALE
Protein Properties Length: 351aa    MW: 39369.9 Da    PI: 9.1853
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000735G0590genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.51.9e-072602932154
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      k +yp+++++++L +++gL+ +q+ +WF N+R +
  PH01000735G0590 260 KWPYPTEDDKARLVQETGLQLKQINNWFINQRKR 293
                      469*****************************87 PP
2ELK25.13.9e-09214235122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELK +L+++Y+++L+++++E++
  PH01000735G0590 214 ELKSELKQGYKEKLVDIREEIL 235
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.7E-183276IPR005540KNOX1
PfamPF037903.1E-153572IPR005540KNOX1
SMARTSM012564.0E-1595158IPR005541KNOX2
PfamPF037912.1E-10119157IPR005541KNOX2
SMARTSM011880.0032214235IPR005539ELK domain
PfamPF037891.9E-5214235IPR005539ELK domain
PROSITE profilePS512139.83214234IPR005539ELK domain
PROSITE profilePS5007111.353234297IPR001356Homeobox domain
SuperFamilySSF466891.07E-15236299IPR009057Homeodomain-like
SMARTSM003893.4E-10236301IPR001356Homeobox domain
CDDcd000865.02E-11237298No hitNo description
Gene3DG3DSA:1.10.10.601.3E-24241298IPR009057Homeodomain-like
PfamPF059201.0E-17254293IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MAFHYPDHGL AMDAAAASSP NPSFSPGAGG VEREKVAIAA HPLYERLLEA HVACLRVATP  60
VDQLPRIDAQ IAARPPPLAA PRRRGARPLH AVCNGNMQKG RCLNLDQKLS IIEKTIETHY  120
VLLLCSFKEQ LQQHVRVHAM EAVMGCWELE QSLQSLTGAS PGEGTGATMS DDEDNQVDSE  180
TNMFDGNDGS DGMGFGPLIL TEGERSLVER VRHELKSELK QGYKEKLVDI REEILRKRRA  240
GKLPGDTASI LKAWWQAHSK WPYPTEDDKA RLVQETGLQL KQINNWFINQ RKRNWHSNPT  300
SSGEKTKKKR VQQCILSFAL EQQDLKTNPF TRKFLKRYNL WANKSSKFVV *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1290309RKRNWHSNPTSSGEKTKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000735G0590
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0076270.0AB007627.2 Oryza sativa Japonica Group HOS58 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626238.11e-177homeobox protein knotted-1-like 2 isoform X2
SwissprotQ0E3C31e-178KNOS2_ORYSJ; Homeobox protein knotted-1-like 2
TrEMBLA0A0D9YNC11e-175A0A0D9YNC1_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0G2M11e-175A0A0E0G2M1_ORYNI; Uncharacterized protein
TrEMBLA0A0E0NAT81e-175A0A0E0NAT8_ORYRU; Uncharacterized protein
STRINGOGLUM02G06260.11e-176(Oryza glumipatula)
STRINGOMERI02G07110.11e-176(Oryza meridionalis)
STRINGORUFI02G06400.11e-176(Oryza rufipogon)
STRINGONIVA02G07290.11e-176(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-137KNOTTED1-like homeobox gene 3