PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000738G0520
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family G2-like
Protein Properties Length: 431aa    MW: 46904 Da    PI: 6.0522
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000738G0520genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like85.64.9e-27159213156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k +++WtpeLH+rFv+aveqL G++kA+P++ile+m+ + Lt+++++SHLQkYR +
  PH01000738G0520 159 KSKVDWTPELHRRFVQAVEQL-GIDKAVPSRILEIMGFDTLTRHNIASHLQKYRCH 213
                      6799*****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.807156215IPR017930Myb domain
SuperFamilySSF466891.45E-18157216IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-26157216IPR009057Homeodomain-like
TIGRFAMsTIGR015576.3E-26159213IPR006447Myb domain, plants
PfamPF002491.3E-8162211IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010638Biological Processpositive regulation of organelle organization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MEEVGAVMSD MEFDFTVDDI DFGDFFLRLE HGDALPDLEV DPAEIFTDFE PVTTGDERVQ  60
DQEVPSVELS AAVADVGAVN PCGGVTGVVG EENTAFAADR EEKGECNHAE EVEEGNGDVG  120
GGDGAVVTEA KSPSSTTSSS QEAESRHKSS RKHSQGKKKS KVDWTPELHR RFVQAVEQLG  180
IDKAVPSRIL EIMGFDTLTR HNIASHLQKY RCHRKHVLAR EAEAANWTHR RQMYAAGAGA  240
AVKRPDSTVW TVPTIGFPPT PPPPPMQHFG RPLHVWGHPT MDSPRMPMWP RHLVPRAPTP  300
RWAPPRPPPS DPAFWHHPYM RGPAHMPTQG TPCMAMPMPS ARFPAPTVAG VVPCPMYRSL  360
TPPALPSKNQ QDAQFQLQAQ PSSESIDAII GDVLSKPWLP LPLGLKPPSM DSVMGKLQRQ  420
GVANVPPACG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-16156217263ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. {ECO:0000269|PubMed:19808806}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000738G0520
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812542.10.0probable transcription factor GLK1
SwissprotQ5Z5I40.0GLK1_ORYSJ; Probable transcription factor GLK1
TrEMBLA0A1E5VSE80.0A0A1E5VSE8_9POAL; Putative transcription factor GLK1
STRINGOPUNC06G13180.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.14e-61GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang Y, et al.
    A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes.
    Plant Methods, 2011. 7(1): p. 30
    [PMID:21961694]