PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000740G0150
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 310aa    MW: 33974.9 Da    PI: 5.5734
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000740G0150genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.92.8e-1690136455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  E+rRR+riN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  PH01000740G0150  90 VHNLSEKRRRSRINEKMKALQSLIPNS-----NKTDKASMLDEAIEYLKQLQ 136
                      5*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-2084146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-2085146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.75286135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.94E-1889140No hitNo description
PfamPF000109.7E-1490136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-1892141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MDEQDRGFGG GGAAVQELVF LQRRRRREEE EEVRRQMFGP VDGVAFPAAG LGQQQVDYGE  60
LGGFCESETG GSSEPETMGG GGERSRDAEV HNLSEKRRRS RINEKMKALQ SLIPNSNKTD  120
KASMLDEAIE YLKQLQLQVQ MLSMRNGVYL NPSCLSGALE PVQASQMFAA LGGSYVTASN  180
SGAVMPPVNQ SSGAHHSFDP INSPPQNQPP PLVLPSCPNT TIPEHPFHLE LSQPQLRSFQ  240
LPESSEMMFR GEIMPKHHLT SAHESANLPG KEMNSIRQEP PMLNTDHFDG CSHSKEQSQD  300
TVPKDTRHA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000740G0150
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0916450.0FP091645.1 Phyllostachys edulis cDNA clone: bphyst005e22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561052.21e-142transcription factor SPATULA
RefseqXP_014752502.11e-142transcription factor SPATULA
TrEMBLA0A2K2DQA81e-140A0A2K2DQA8_BRADI; Uncharacterized protein
STRINGBRADI1G48400.11e-141(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.13e-39bHLH family protein