PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000746G0560

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

WRKY

Protein Properties

Length: 290aa MW: 31536.1 Da PI: 5.1525

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000746G0560	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.2	4.5e-30	84	142	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ +p+v+ +tY+++Hnh+ PH01000746G0560 84 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRANPTVLLVTYSSDHNHP 142 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.3E-30	81	144	IPR003657	WRKY domain
SuperFamily	SSF118290	1.05E-25	82	144	IPR003657	WRKY domain
SMART	SM00774	2.4E-35	83	143	IPR003657	WRKY domain
PROSITE profile	PS50811	31.387	84	144	IPR003657	WRKY domain
Pfam	PF03106	1.8E-25	85	142	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MSAEDGYCST GTESPRAESV DEQAAAQSPR GGQKRELPSP LPSPSSPLPP AKRSRRSVEK 60 RVVSVPIGEC GDRPKAGGEG PPPSDSWAWR KYGQKPIKGS PYPRGYYRCS SSKGCPARKQ 120 VERSRANPTV LLVTYSSDHN HPWPLPKSSS HPNKSSPRPK APKPDPAVEG QPELAEHETE 180 PEVPEGPEPE PEQEQKLVVE PSVITTVAPA PAAEEEESFD FGWFHQYPAW PRSALYAPAF 240 DAAPLPPPEE WERELQGEEA LFAGLGELPE CPVVFGRRRE LALAATAPCS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	9e-20	60	144	6	79	Disease resistance protein RRS1
5w3x_D	9e-20	60	144	6	79	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000746G0560

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP095416	0.0	FP095416.1 Phyllostachys edulis cDNA clone: bphyem104a12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025817654.1	1e-125	probable WRKY transcription factor 65
Swissprot	Q9LP56	2e-53	WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBL	A0A3L6SS55	1e-127	A0A3L6SS55_PANMI; Putative WRKY transcription factor 65
STRING	Pavir.Eb03138.1.p	1e-124	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7088	36	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	1e-37	WRKY DNA-binding protein 65

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796]