PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000750G0690
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GATA
Protein Properties Length: 259aa    MW: 28054.8 Da    PI: 8.1297
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000750G0690genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA40.34.3e-13164190935
             GATA   9 TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      Tp +Rrgp g+++LCnaCGl+++ kg+
  PH01000750G0690 164 TPAMRRGPTGPRSLCNACGLKWANKGT 190
                      ************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132015.5482863IPR010399Tify domain
SMARTSM009791.0E-92863IPR010399Tify domain
PfamPF062007.0E-133062IPR010399Tify domain
PROSITE profilePS5101713.49390132IPR010402CCT domain
PfamPF062035.1E-1690130IPR010402CCT domain
SMARTSM004014.2E-6154202IPR000679Zinc finger, GATA-type
CDDcd002023.66E-10160199No hitNo description
Gene3DG3DSA:3.30.50.103.4E-10163192IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.71E-6163200No hitNo description
PfamPF003203.2E-11164190IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MAADGHDPLL PSDGAAGEDD AAAAEALLSA ASEQLTLVYQ GEVYVFDPVP PQKVQAVLLV  60
LGGCEVPPGL VSMTVPSASD EKSTTAAARR VASLMRFREK RKERCFDKKI RYSVRKEVAQ  120
KMKRRKGQFA GRADFGDVAC SSAAFGSPAN REDDHFRETH SRLTPAMRRG PTGPRSLCNA  180
CGLKWANKGT LRSPLNAPKV TVQHPTNLSK MCDTDDNKVI LRAEHNQATI KIDSEMIPEQ  240
EQKLEVLPPT EDDSKAPS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000750G0690
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3767001e-153AK376700.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3132B09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632019.11e-132GATA transcription factor 19 isoform X1
SwissprotQ0DNU11e-133GAT19_ORYSJ; GATA transcription factor 19
TrEMBLA0A0D9ZCS01e-132A0A0D9ZCS0_9ORYZ; Uncharacterized protein
STRINGOGLUM03G32890.11e-133(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.22e-49ZIM-LIKE 2