PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000778G0010

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

HB-other

Protein Properties

Length: 271aa MW: 28354.6 Da PI: 5.8928

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000778G0010	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.8	3.8e-18	59	113	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR +++qle+Le+ ++ ++yps++ r+eL+ k+gL++rq ++WF+ rR k++k PH01000778G0010 59 KRVMKSPYQLEVLEQTYAVEQYPSETLRAELSVKIGLSDRQLQMWFCHRRLKDRK 113 79999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.99E-17	37	114	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.4E-17	44	113	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.483	54	114	IPR001356	Homeobox domain
SMART	SM00389	2.5E-15	56	118	IPR001356	Homeobox domain
CDD	cd00086	1.82E-14	59	113	No hit	No description
Pfam	PF00046	7.3E-16	59	113	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MEAAGGGGGG GDGDGDGAGK APLEAPAEAT PPPPAPAVAP ASASGGGAGA SGSAEKPVKR 60 VMKSPYQLEV LEQTYAVEQY PSETLRAELS VKIGLSDRQL QMWFCHRRLK DRKLPSKRQR 120 WDDEAAAAPV MPPPPVLPPP AMPLASSELM MGAASPYDEP LPPTHSRRGV GRSSAVPRIS 180 APDTGRRYYE PLPVMLPPPV APMQLTQAEL RVINSVESQL GEALREDGPV LGIEFDPLPP 240 GAFGAPIGMY LKIPIVFILR IKPNNAQAGL *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000778G0010

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003566982.1	8e-95	homeobox-DDT domain protein RLT2
TrEMBL	A0A1D6NG87	1e-103	A0A1D6NG87_MAIZE; Homeobox-DDT domain protein RLT1
STRING	BRADI2G46230.1	3e-94	(Brachypodium distachyon)
STRING	Si004333m	7e-97	(Setaria italica)
STRING	GRMZM2G159357_P01	2e-94	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16740	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.2	1e-38	Homeodomain-like transcriptional regulator