PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000783G0010
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 253aa    MW: 26602.8 Da    PI: 10.5838
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000783G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.43.9e-06156196954
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r RR+r+ +++  L++l+P        K++ a++L +A  Y+k L
  PH01000783G0010 156 ARLRRERVSKRLRMLQKLVPGG-----SKMDTASMLDEAASYLKFL 196
                      599*****************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.89E-10138201No hitNo description
PROSITE profilePS5088813.999147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.11E-12152205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-10153204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-11153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MLSSYSGTTG GNISSGESEN YRGGRGHDAE VVSPTSTISP TTPSLPLTTS TQALNPKRKL  60
GPTIATAPPA PPLPRPGAKR KASTTATSIT FGQGAHDPTA GAAGGYEPDM EAMAQVKELV  120
YLAAAMRPVN LGTDAAAEKP RRKNVRISSD PQTVAARLRR ERVSKRLRML QKLVPGGSKM  180
DTASMLDEAA SYLKFLKSQV QALETIGGGS SSTNTTSSSS TARLQQHYYN NNPGFLGFER  240
NNNNINSGFA NF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137143EKPRRKN
2138143KPRRKN
3156161RLRRER
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the negative regulation of flowering. May be involved in the repression of the flowering factor GI and HD1 by interacting with PIL13 and PIL15 and competing with PRR1. Possesses transactivation activity in yeast. {ECO:0000269|PubMed:21549224}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000783G0010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3554554e-97AK355455.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1020N05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818336.11e-92transcription factor LATE FLOWERING-like
SwissprotA0A0P0WQ903e-45LF_ORYSJ; Transcription factor LATE FLOWERING
TrEMBLA0A0E0DNR41e-98A0A0E0DNR4_9ORYZ; Uncharacterized protein
TrEMBLA0A1E5V7Z61e-98A0A1E5V7Z6_9POAL; Transcription factor bHLH87
STRINGOMERI05G07090.12e-99(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.16e-36bHLH family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]