PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000789G0200
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Dof
Protein Properties Length: 143aa    MW: 14549.2 Da    PI: 8.3247
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000789G0200genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof50.64.2e-165372861
           zf-Dof 28 qPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                      Pry CkaCrr+Wt+GG+lr+vPvGg  rknk+s
  PH01000789G0200  5 SPRYRCKACRRHWTEGGTLRDVPVGG-VRKNKRS 37
                     7***********************96.6777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027017.8E-14436IPR003851Zinc finger, Dof-type
ProDomPD0074781.0E-9636IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MESASPRYRC KACRRHWTEG GTLRDVPVGG VRKNKRSGGK GEAKAASTAT ASATAASSGG  60
GAVDAFPDIL RQMLFQPATA VGGGGYSIDL SAWQQMVAAT APPQGTSDVG AVGGTAPDAN  120
CGSVQYWNGW QQDDMPGLDR AC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000789G0200
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0934391e-141FP093439.1 Phyllostachys edulis cDNA clone: bphylf045o17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614315.13e-39dof zinc finger protein 1-like
TrEMBLA5HWG25e-39A5HWG2_HORVV; Dof zinc finger protein 13
TrEMBLM0YU656e-39M0YU65_HORVV; Uncharacterized protein
STRINGMLOC_72949.11e-39(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.47e-12Dof family protein