PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000795G0120
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 248aa    MW: 26825.8 Da    PI: 6.3763
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000795G0120genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.91.8e-082546526
                     --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                     +C+ f+++G C+ Gd C +aH+
  PH01000795G0120 25 PCPKFRKGGSCWKGDACEYAHD 46
                     7********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.5682048IPR000571Zinc finger, CCCH-type
SMARTSM003560.0152147IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-52250IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-62546IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-52547IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.9445680IPR000571Zinc finger, CCCH-type
SMARTSM00356685679IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MAFPFSPASA LATSPAIFSA LTSWPCPKFR KGGSCWKGDA CEYAHDVFEC WLHPAQYRTR  60
LCKDEVGCPH RICFFAHKPE DLCAVNPSAV SVGMQPVSSP PNGLDMAMLN PSWPSSPTSR  120
LKTALGAREL DFDLELLTLD QCQQKLFDKV SNTPSPRVSW CGTGGLGLPL TTVASARTVP  180
DYTDLLGSVD PAVLSQLHAL SLKQADDVPA YSSLLDMQLH MPTLPMAGAN TTVFRLDHSV  240
AMMPWGW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000795G0120
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0969790.0FP096979.1 Phyllostachys edulis cDNA clone: bphyem206f17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439217.21e-113zinc finger CCCH domain-containing protein 33
RefseqXP_025807185.11e-113zinc finger CCCH domain-containing protein 33-like
SwissprotQ688R31e-109C3H33_ORYSJ; Zinc finger CCCH domain-containing protein 33
TrEMBLA0A3L6SYD41e-113A0A3L6SYD4_PANMI; Zinc finger CCCH domain-containing protein 33
STRINGPavir.J10016.1.p1e-114(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60132133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.14e-31CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]